Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1322 ATGGGCATGTTTGTTTTGGTTGTTTCATTGCTTTTACTATCAACCCTTTTCAGCTCTCGCACTTTTGCTCTCACTCCAGATGGCTTAACGTTGTTGGAAATTAGAAGCGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAACTTCCCTGCAAATGGTCTGGTATATCTTGTCACCCTGAGGACCAACGAGTTAGCTCAATTAACTTGCCTTACATGCAACTTGGTGGGTTCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGACTGGCACTTCACGAAAATGGCTTACATGGAAATATTCCTAACGAAATCACTGAATGCACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCGTCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTTGGAATTCTGAGCACATTTGGAAGCAATTCGTTCATTGGTAATCTAGATCTCTGCGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCTGTTCCTGCAAAAAAATCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAGTGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCTGGAGGATTTGGCATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTTCTGCATGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGGATAGCCTTCGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAATTTGGAGCCTCATGTATCAGACTTTGGACTGGCCAAGCTTTTGGTTGATGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGCTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACAAAAGATGCAAGGACGTTGATGCTGATACTGTAGAAGCAATTCTCGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCAATGAGTCAAGTTTTACAGTTTCTCGAGCAAGAAGTCATGTCACCTTGTCCTAGAATGGAGTTGTCTCTTTATAGGAATGACCTTTGGACCTCTTCAAAGGCCAAGGCTGCAACTCAGCTTCAAGTTTTTATTTTTTTTCAATCCTCTGGCATTCTTCGCAGCTTTTCCCCAAATCCCATTCCCCTACAAATGATAGAACTACAGAAGCTTGGAGGTGGGTCAAGAGTAAAATCCGGAATGAGCCTGCAATTGAAGCCAATTCATCACCACCTCCACCACCGTGGCCGCCGCCATTGCCACAGTCAGGAGCCGTATCGATCCAGTTACAGAGTCCAAATTGCTCTATCGGCATCTCTGCACCTGAACCATTCATTCATTTCTCTGCTTCCGAATTTCCATTTATTGAACGGAAAACGAGGGATTTCGTTGGGATTATTCAACGGTAGGAGGAGAAGATGTGGGGGCGGCGGCAGAATCGGTCACCGGAGTATTGCGGCGTCCGGCATTGCTGGAACACCGGTTTCAGATGGGTCAAAACCGGACAAAGGCTTTGTTTCTCCTCCCCTCAGTGACATCCTTTGGCCTTCTGCAGGGGCATTTGTAGCAATGGCAATGCTGGGGAAAATGGATCAGATTCTAGCGCCAAAGGGACTTTCAATGACAATTGCACCATTAGGAGCCGTTTGTGCTGTCCTGTTCGCAACACCTTCATCCCCTGCTGCTCGAAAATACAACATGTTCATGGCCCAGATTGGGTGTGCGGCAATTGGAGTTTTGGCGTTTACTTTGTTGGGGCCTGGATGGCTGGCTAGAAGCTCTGCTCTGGCTGCATCCATGGCGTTTATGATCTATACTGGTTCGACGCACCCACCAGCTGCAAGTTTGCCGATATTGTTCATCGATGGCGCTAAGATGCAACAGCTTAATTTCTGGTATGCTTTGTTTCCCGGTGCCGCTGGATGTATTCTCCTTTGCTTAGTACAAGAGTTAGTGGTGTACTTAAAGGAGAAGTTCAAATTTTAG 2742 44.46 MGMFVLVVSLLLLSTLFSSRTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDELPCKWSGISCHPEDQRVSSINLPYMQLGGFISPSIGKLSRLQRLALHENGLHGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGILSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPAKKSSHYVKGVLIGAVSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPRMELSLYRNDLWTSSKAKAATQLQVFIFFQSSGILRSFSPNPIPLQMIELQKLGGGSRVKSGMSLQLKPIHHHLHHRGRRHCHSQEPYRSSYRVQIALSASLHLNHSFISLLPNFHLLNGKRGISLGLFNGRRRRCGGGGRIGHRSIAASGIAGTPVSDGSKPDKGFVSPPLSDILWPSAGAFVAMAMLGKMDQILAPKGLSMTIAPLGAVCAVLFATPSSPAARKYNMFMAQIGCAAIGVLAFTLLGPGWLARSSALAASMAFMIYTGSTHPPAASLPILFIDGAKMQQLNFWYALFPGAAGCILLCLVQELVVYLKEKFKF 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26428844 26436759 + CrPI670011_01g013220.1 Cre01g1322 488867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1322 913 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Cre01g1322 913 SUPERFAMILY L domain-like 26 206 - -
Cre01g1322 913 Gene3D Transferase(Phosphotransferase) domain 1 387 590 - -
Cre01g1322 913 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1322 913 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 593 - -
Cre01g1322 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1322 913 Pfam HPP family 795 904 IPR007065 -
Cre01g1322 913 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cre01g1322 913 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1322 913 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Cre01g1322 913 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cre01g1322 913 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cre01g1322 913 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cre01g1322 913 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cre01g1322 913 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cre01g1322 913 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 583 IPR051564 GO:0016020(PANTHER)
Cre01g1322 913 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1322 Cre-Chr1:26428844 Cre07g1493 Cre-Chr7:30152885 3.60E-131 dispersed
Cre11g2123 Cre-Chr11:32932392 Cre01g1322 Cre-Chr1:26428844 1.10E-81 transposed
Cre01g1322 Cre-Chr1:26428844 Cre11g0631 Cre-Chr11:3497722 2.40E-33 wgd
Cre01g1322 Cre-Chr1:26428844 Cre06g2506 Cre-Chr6:32765174 3.40E-206 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63822 PF00069 Pkinase 1.80E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1322 - - - 0.0