Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1327 ATGAGAGAAACAGAAACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGTTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCACAGATACTTTGATGCTGCAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGGTACGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCGAATGATCAGATAATGCAAGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCAAGATGTCGATGGGGGTTCGTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCCCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCGGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCGAAACCTGGGACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCCTGTTAG 1323 42.63 MRETETTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVHRYFDAANNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26471749 26473429 + CrPI670011_01g013270.1 Cre01g1327 488872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1327 440 SUPERFAMILY Pectin lyase-like 93 431 IPR011050 -
Cre01g1327 440 Pfam Pectate lyase 178 358 IPR002022 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cre01g1327 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cre01g1327 440 PANTHER PECTATE LYASE 18-RELATED 18 437 IPR045032 GO:0030570(InterPro)
Cre01g1327 440 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570(InterPro)
Cre01g1327 440 Gene3D - 92 433 IPR012334 -
Cre01g1327 440 SMART amb_all 167 364 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1327 Cre-Chr1:26471749 Cre08g0841 Cre-Chr8:21488235 1.20E-175 dispersed
Cre01g1327 Cre-Chr1:26471749 Cre10g1623 Cre-Chr10:30316806 1.00E-179 wgd
Cre01g1327 Cre-Chr1:26471749 Cre05g2625 Cre-Chr5:37313946 6.10E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1327 K01728 - csv:101218812 821.617