Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1331 ATGACCGTACGAGTTCCTTCCAGCGTGACCCGCATGCAAAGCCTCTCCAACTTCCACGTGCACAACCCGACATCCTCCCGCCACTCTCACGCGCGTCGTGGCAATGGTAGAATAATAGGGGTTTTTGTTGAAGTGGGCACATTGAGTGAGGTGGAGCTTAACGTATCAGCAATGGGGAAGTCGCCAGGGAAATGGATCAAGACGATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGTTTCTGCCAAGGCATCAGAAAATACTACTGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAATACCATAGATACAAATGAAGGCGTGCCAAAAATTACTAACAATGAAGCAGCTAATGTGTTGCATGAAAGATCAATATCAATTCCAGGAAATCAAGATGCAGAAATTCAAGGATCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCATTTGGTAAGGAGACAGGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGCTTGAAGTGCAGAACAAATATAGATTAGTGCAGATACAGGATCAACCATTAGTAGATCCTGCTGGCGTAAGTCTTTCTACACGAATGGCAAAGCTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACTTCAAAACCTATGCAACTCTATTTTGATACTGAAGCTGAAAATTCAGTCTTGAAATGGTTAGAACGCTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCCCCCGAGTCTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACTGGAGAGGCACATACCGTGAGATCAAAGCGCACAAGGAGAGTTCCTGCTGCAAACAATGACAGTGCTGCTGTCCAATCATCTACAGAATTTGAGAAACCCAAACGGAATTTTAGGAAAGTCTCTAGTCATTCAGCCGCCGAGCAGGTTCAGGAGAATCCCCAGATGGAGCTCGAAAAGGTCAAGCGTAGTCTGAGAAAGGTCCATAACCCCGTCCTTGAGAATCCTGCCCAAACAGAAGTTGATGCTGAGAAGCCCAAGGAAATTTTGGAGAAGGCTTCTAATGGTCTAAGCCGTGACGTTTTGGCGAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAACAAATCCCCTCCAGCCTGATTTGGAAACAACTCCTGAGCCGTTACCAACTAAAGAGATAGTTAATGTACCTATCAGTGATCCAGTTGTAGATTCACAGCCTTTGATTGAGAGCAGTGACAAGGATAAAAGCATTGCTGGAGATGAGGCTGCTGTGGAGACTCAGCCTTTGACAGAGAGCTACACTAAAGATGAAATCCACCCATTACCAAATGGGGAATCGAACCACAAGGAGGATCATACTAACAACGAGAATCCGAAATCTGGCAGGAAATCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGCTGCAGCACAGTCCAACCTTACCTAGCTACATGGCAGCAACTGAATCTGCTAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAAAAATAACAACCTCAACAGACGTCATTCTTTACCGTCACCCACTAATGCTAAAATTAGCTCACAGTCTCCACGAACACAAAGACTCGTTCAAGCAGGTGGCAAAGGAGGAAACAAAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGGAAAAGGCTTCGGCTGCTCGAACAGAAGAACATACCAATCTTTGTCGCTGAATTTGAGCTCATATGGCCGAATTTCGTTGATTCAATGGAAGAATTTCGGTTTTTTGTTTTCGGTGAGGAAGTTCCATACGGAAATCTTCGCCTTCGTTCCCGCTGGTGGCGAAATTCAAATCTTCCGGTTTCGATATCAATGGCGAATACACCAATTGAAGCCGCAACCTTCTGGACCCAAGCAAATGCTCTCCTAAGGAAAAACTTAACCTACCAGAAACGAAATTTGAGGACAAATATTCGTCTGATTTCCTTCCCGTTCATCCTCTGTTTATTGCTCGTTCTACTTCAAAAAATAGTCAACAACGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATACGAATGGAGATGGTGTATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACTTTGATACAAGCAGTGAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCAATATTGCAAATGCCTGCTCCTCATTTTCGTGCTGTGCGAACAGATTTTTTTCCATATGAAGACTTGCCAAATGAATCATGCAGGAAATCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCTCTTGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTCTTTGTCTTGGAACTCTTCTGATGTTCTATATGGTGCATCGCTTAACGTTTTGGGATCAGCATCGAGGCCTAGAACAAACAATTATCTTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATTATATGCAACGTCAGTGTGTCACAGGCTCGACATTGTCAATTCCTGTTTCAATATTCTCTCTTACAAAGACACAAGATATTGCATGTGTTCAAGGTCTACAATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAGAGGTTACAAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTCGATTTCTTAAATTCTGATGGGAACAATTTTAATGTGACTATATGGTATAATTCATCATATAAGAGTGACATTGGCCGTTCTTCGAATGTTCTGTTGCGGGTTCCACGCTTGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTTTGCTAGGAGCAAGCACAGAGATGCTCTTTGAGTTTGTCAAAGAAATGCCGAAACCTGCAACAAAGATCAGGCTGGATTTCTCTTCTCTACTTGGTGCACTCTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCAGTTATCTTGACATCTTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCGTATGCTTATTTTCTCACAATTTCTGCAGTATACATGTTTTGTTTTGTGTTGTTTGGTTCAGTTATAGGGCTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTTGTGTTCTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGTGGCTGCCATGTTTTCAAATGTCAAGACTGCTGAAGGGCTCTTAGGTGGATTTCTCTTCCAGTTTTTTATTGAAGATCCATCATTCCCACGTGGCTGGATCATGGTTATGGAGTTATATCCTGGATTTTTGCTGTATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACTGATAGTACTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATATTATATCGATAAAGTTTTATCATCGGGAAGTTGGAAGTGTGCATTATTTTTCCTCCAAAGACATGACAAAAAACCTCCATCTCAGAATCCTGGTTTGGAAAGGCAAGGTTCAAAAGTTTTGGTTCAAACTGATAAACCTGATGTCAGGCAAGAGATGGAGAAGGTCGAAAAGTTGCTAAAGGAAGGAGATCCAAGTTATGCCATCGTTTCTGACCATCTCAAAAAGGTGTATCCAGGAAAGGATGGAAATCCTGAGCAGTTCGCAGTTAGAGGACTATCTCTTGCTCTGGCTCGAGGAGAATGCTTTGGGCTGCTAGGTCCAAATGGTGCGGGAAAGACCTCCTTTATCAATATGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTGGTTGAAGGTCTGGACATAAGCACTGAGATGAATGGCATATACGCAAGCATGGGTGTTTGTCCACAACATGACCTGCTATGGGAAACCTTAACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGTGTCAACCTCTTCCATGGAGGAGTAGCAGAAAAACAAGCTGGGAAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGGGATCCTAAAGTTGTCTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAATTTATGGAATGTTGTGAAGCGTGCAAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCGGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGAAGCCTGCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGCGGGGCTTATGTATTTACAATGACAACATCCCCTGCTCATGAAGGACATGTTGAGAACATGGTGAAGCATTTGGCCTCTGGAGCTAGCAAGATATACCACTTATCTGGAACTCAAAAATTTGAGCTTCCAAAACACCAAGTTCGGATTGCTGATGTGTTTCAAGCAGTTGAAAATGCCAAAAGCAGGTTTACAGTGTTGGCTTGGGGTTTGGCTGACACAACTTTAGAGGACGTCTTTATCAAAGTTGCTAACGGCGCCGAGTCTTCAGATATGCTTTCTTGA 4959 42.69 MTVRVPSSVTRMQSLSNFHVHNPTSSRHSHARRGNGRIIGVFVEVGTLSEVELNVSAMGKSPGKWIKTILFGKKSSKSNLSKSRERNGNEKEVLVSAKASENTTVISHPVASHPTPNTIDTNEGVPKITNNEAANVLHERSISIPGNQDAEIQGSTCQDAPSDPERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEVQNKYRLVQIQDQPLVDPAGVSLSTRMAKLSANAFTIKLASSTTSKPMQLYFDTEAENSVLKWLERWSNSRFWKPIPQVKKAPESKSQRRLSTGQTGEAHTVRSKRTRRVPAANNDSAAVQSSTEFEKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLENPAQTEVDAEKPKEILEKASNGLSRDVLARGTSNSSEKMKKEAISTNPLQPDLETTPEPLPTKEIVNVPISDPVVDSQPLIESSDKDKSIAGDEAAVETQPLTESYTKDEIHPLPNGESNHKEDHTNNENPKSGRKSSTPAKQERVENGLQHSPTLPSYMAATESAKAKLRAQGSPRFGQDSEKNNNLNRRHSLPSPTNAKISSQSPRTQRLVQAGGKGGNKNDKALLGSRDGNGKVIQADWRRKRLRLLEQKNIPIFVAEFELIWPNFVDSMEEFRFFVFGEEVPYGNLRLRSRWWRNSNLPVSISMANTPIEAATFWTQANALLRKNLTYQKRNLRTNIRLISFPFILCLLLVLLQKIVNNELDKPKNNCGCVCVDTNGDGVCEKVCGLEYSTLIQAVSCPIPSPPQWPPILQMPAPHFRAVRTDFFPYEDLPNESCRKSMSCPVTMLFTGNNRSLGNILAASMVPSSLSWNSSDVLYGASLNVLGSASRPRTNNYLDPAFFSNLPLYYMQRQCVTGSTLSIPVSIFSLTKTQDIACVQGLQLWRNSSSEVNDEIYRGYKNGNSEGKINEILSGFDFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLASNGYLKFLLGASTEMLFEFVKEMPKPATKIRLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLTISAVYMFCFVLFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSNVKTAEGLLGGFLFQFFIEDPSFPRGWIMVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWGDLTDSTNGMREVLIIMLVEWIVVLLVAYYIDKVLSSGSWKCALFFLQRHDKKPPSQNPGLERQGSKVLVQTDKPDVRQEMEKVEKLLKEGDPSYAIVSDHLKKVYPGKDGNPEQFAVRGLSLALARGECFGLLGPNGAGKTSFINMMIGLIKPTAGTALVEGLDISTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALIQAVEESLKGVNLFHGGVAEKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRIGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSPAHEGHVENMVKHLASGASKIYHLSGTQKFELPKHQVRIADVFQAVENAKSRFTVLAWGLADTTLEDVFIKVANGAESSDMLS 1652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26513982 26530749 + CrPI670011_01g013310.1 Cre01g1331 488876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1331 1652 Gene3D - 1319 1590 IPR027417 -
Cre01g1331 1652 CDD ABC_subfamily_A 1334 1555 - -
Cre01g1331 1652 SMART AAA_5 1360 1543 IPR003593 GO:0016887(InterPro)
Cre01g1331 1652 ProSitePatterns ABC transporters family signature. 1469 1483 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre01g1331 1652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1330 1567 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre01g1331 1652 ProSiteProfiles IQ motif profile. 193 215 - -
Cre01g1331 1652 MobiDBLite consensus disorder prediction 542 570 - -
Cre01g1331 1652 MobiDBLite consensus disorder prediction 588 622 - -
Cre01g1331 1652 MobiDBLite consensus disorder prediction 524 541 - -
Cre01g1331 1652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1330 1558 IPR027417 -
Cre01g1331 1652 MobiDBLite consensus disorder prediction 320 388 - -
Cre01g1331 1652 Gene3D - 167 216 - -
Cre01g1331 1652 MobiDBLite consensus disorder prediction 1 24 - -
Cre01g1331 1652 Pfam ABC transporter 1352 1496 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre01g1331 1652 Pfam IQ calmodulin-binding motif 193 210 IPR000048 GO:0005515(InterPro)
Cre01g1331 1652 Pfam IQ calmodulin-binding motif 171 190 IPR000048 GO:0005515(InterPro)
Cre01g1331 1652 ProSiteProfiles IQ motif profile. 169 197 - -
Cre01g1331 1652 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 733 1643 IPR026082 GO:0005319(PANTHER)|GO:0006869(PANTHER)|GO:0016020(InterPro)|GO:0042626(PANTHER)|GO:0043231(PANTHER)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre01g1331 1652 MobiDBLite consensus disorder prediction 439 640 - -
Cre01g1331 1652 FunFam ABC transporter A family member 7 1319 1595 - -
Cre01g1331 1652 Pfam Protein of unknown function (DUF4005) 538 629 IPR025064 -
Cre01g1331 1652 SMART iq_5 191 212 IPR000048 GO:0005515(InterPro)
Cre01g1331 1652 SMART iq_5 168 190 IPR000048 GO:0005515(InterPro)
Cre01g1331 1652 MobiDBLite consensus disorder prediction 1 32 - -
Cre01g1331 1652 MobiDBLite consensus disorder prediction 439 463 - -
Cre01g1331 1652 Pfam ABC-2 family transporter protein 966 1263 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1331 Cre-Chr1:26513982 Cre06g2500 Cre-Chr6:32714302 1.90E-74 dispersed
Cre03g1351 Cre-Chr3:24341572 Cre01g1331 Cre-Chr1:26513982 7.70E-07 transposed
Cre10g0717 Cre-Chr10:6931910 Cre01g1331 Cre-Chr1:26513982 3.00E-10 transposed
Cre11g2022 Cre-Chr11:31985028 Cre01g1331 Cre-Chr1:26513982 5.20E-09 transposed
Cre01g1331 Cre-Chr1:26513982 Cre06g2499 Cre-Chr6:32704623 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75