Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1353 ATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTTTTCGCTGGCGAAGGCTCTGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTATGGCCATGGAAGTTACGGCCGAGGAGGACATGGTTACGGTCATGGTTATGGTTATGGTCGGAGGGGGGCCGACACGGGAAGAGCTGCGTCGGATTTAGTAGTGATAGCGATAGCGCATGCATTTGCGCTGTTCTCAGCGGTGGCGGCGAGTATCAATATTTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGGGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTCGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCAGGAATATCAGAATTACACGGATTTCTGCTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTCTACGCAACAGCAATAGACCCAAAGAGGGGGAGTTTAGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCTGCCAGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTTATTCCCGTTGAACCTCCTCTTCATACGCACCAGCCCTTAGCTCCTGAGGATTACTGA 861 51.57 MPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRGGHGYGHGYGYGRRGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26723823 26725759 - CrPI670011_01g013530.1 Cre01g1353 488898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1353 286 CDD MIP 21 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 Gene3D Glycerol uptake facilitator protein. 5 272 IPR023271 -
Cre01g1353 286 PANTHER AQUAPORIN-8 5 276 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cre01g1353 286 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Cre01g1353 286 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1353 286 FunFam Probable aquaporin TIP1-1 66 282 - -
Cre01g1353 286 SUPERFAMILY Aquaporin-like 13 277 IPR023271 -
Cre01g1353 286 NCBIfam MIP family channel protein 25 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1353 Cre-Chr1:26723823 Cre10g2107 Cre-Chr10:35677890 6.30E-74 dispersed
Cre01g1353 Cre-Chr1:26723823 Cre04g1037 Cre-Chr4:28958360 2.70E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1353 K09873 - csv:101208863 495.738