Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1374 ATGGAAGCTCCAGCAGAAGACAAGGATTCACCACTCGAAGAGCAAACCCCCAAGACCTCCCTCTTCCCGCTCTCGTTCGTCGCCAACAATCCTCAGAGTCTGAGCAGTCCTCCCAATTCAAGCGTTCCTCAGTGGCTCTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGACGATCTTTCATCTCAAAACAATGTCTATCCTTCCCTTTCCGCCGATGGCAATCAGGAAGAGGCTGTGGAAGATGAAGGAGGGCCAAGTGATAGACGTGAGGTTCAGAAGGCTTCTCGATCATATGAATTGCTGGAGTCGTCTGCTTCGGACGACGATTCCGAGCATGAGAAGAGGAAAAAAAGGAAGAAGAAGAGAAGGAGGAGGCGAAATGAATCTGAAGAAAGAGGGGGATTTGGCGAATATGGTTCGAGAAAGTCCGACGTTCGGGCTTGGGCCGATGCTGATGGTAGACCTTCCAAGGATTATTACTTCGACTCTAATGGAGACCGGGATAATCTAGCATTCGGGTCTCTTTACAGGATGGATGTTGCACGCTACAGACCGCTCAACCGTGGGGAAAAACCTGGACTAAGTTTTTATGGATTTTCTCAGTGGAATAAAAGTAGTTCAGCCTTAGACAGAGATGCCGATGCTGATGTGTTGGATAGTAAAGTGAAATCCGGCGGACGCTATTGGTCTGCAAAGAATGCAGCAATAGAGCGACATAAGAACTTCAAACGCGTACGTATTGGTTTTTCTAGAAAAACTCCAGACACATTATTGGATGATTTCATTCCTTTGTTGGATGTTCAAACATCAAATAATATCGAGGAATCTTGGGAGGATGAAGTGCTACGTAAAACGCGGGAGTTTAATAAATTGACTAGGGAGCATCCCCATGACGAGAAGGCTTGGTTAGCCTTTGCTGAATTTCAAGACAAAGTTGCAGCTATGCAACCTCAGAAAGGTGCTCGCTTGCAAACTCTAGAGAAAAAGATTAGCATATTGGAGAAGGCTGCTGAGCTCAACCCAGAAAATGAGGAATTATTGCTATACCTTTTAAAGACTTATCAGAACCGAGATAATATTGATGTGGTGATTAGTAGATGGGAAAAGATACTGATGCAGAATTCTGGGAGTTATAAGTTGTGGAGAGAGTTTCTGCATCTCATTCAAGGGGAGTTCTCTAGATTCAAGGTTTCAGACATGAGACAAATGTATGCACATGCAATTCAAGCTCTATCTGCTGCATGCAACCAGCACATTAGGCAGGCCAATCAAACTGCCAAGCCCTCAGTGGAGCATGATCTTATTCAGCTAGAACTTGGTCTGGTTGATATTTTCATGAGTTTGTGCCGGTTTGAGTGGCAGGCTGGATATCAGGAGTTGGCTACTGCTTTATTTCAGGCTGAAATTGAGTTTAGCTTGTTTTGCCCTGCTTTGCATTTAAATGATCGAAGTAAACAAAGATTATTTGAACACTTTTGGAATACTGATGCTGAAAGAGTTGGTGAAGAAGGTGCCCTCGGTTGGTCTACATGGTTAGAAAAAGAGGAGGAAAATAGACAAAAGGCTATGAGAGAGGAGGCCTTAGAGGCTGATGAAAAGGGTGGTTGGACTGGTTGGTCTGATCCACCACCAAAAGAGAAGAAAAATAGCGATGGCACAGAAACTACTGCAGAAATGGGTGTAGTAGCAGAGGAGACTATGGAGGAATATGTGGAAGAAGAAGATATCGAAAAAGAAGATAGCACAGAAGCTTTGCTCAAAGTTCTAGGAATTAACGCTGATGCAGGTGTTGATGAGGAGGTTAAGGACGCCTCAACCTGGGCTAGATGGTCAAAAGAAGAGTCTTTAAGAGACTGTGAACAATGGATGCCTATCCGGGCAAAAACTGCAGATGTTATTCATGATGAAGGGATGCCTGATGGAGAAACAAATGAGCAATTTCTAAGAGTTATATTATATGAAGATGTCAAAGAGTACCTGTTTTCATTGATTTCAAGCGAAGCCCGTTTATCCTTAATATATCAGCTAATTGAATTCTTTAGTGGAAAAATCTATTCAAGGGCATCTTCAAATAGTTCGAGTTGGATGGAGAGAATACTTAGTTTAGAGGTGTTGCCGGAGGATATATTACATCATCTGAGAAGTGTTCATGATATTCTTAATAAAAGACAAAGTAGTTCAAGTAGCTCCACTTTGGAGGTCCTTGTGGGAGGTTCTGATAACTTATCTCAGATGTCTGACATGATGAAGTTTCTTCGCAATGCTATCTTACTTTGTTTAACAGCTTTCCCACGTAATTACATATTGGAAGAAGCTGCTTTAATTGCCGAAGAGCTATTTGTTACAAAAATGAATTCTTGTAACTCCTCAGTTACCCCCTGCCGTTCCTTGGCAAAGAATCTCTTGAAAAGTGATCGTCAGGACATGTTACTTTGTGGAGTCTATGCGCGAAGAGAGGCAACATATGGAAACATCGATCATGCTAGAAAAGTATTTGATATGGCATTGGCATCTGTGGAAAGCCTTCCTGTGGATCAGAAGTCCAATGCTCCTCTCTTATATTTCTGGTATGCTGAATTGGAGCTTGCGAATGATCATCACAATGGACACAATTCATTAAATCGTGCAGTTCACATTTTATCTTGCCTTGGAAGTGGTACTGCATACAGTCCATTTAAATGTCAACCATCAAGCTTGCAACTGCTGAGAGCGCACCAAGGCTTTAAAGAAAAAATCAGGGAAGTGCGATCTACATGGCTTCATGGAGTTATAGATGACTCGTCTGTGGCTCTCATATCCTCTGCAGCTTTGTTTGAGGAGTTGACCACTGGATACAATGCCGGCCTTGAGGTTTTAGATCAGGCTTTCTCCATGGTACTTCCAGAAAGAAGAAAACAGAGCTATCAACTAGAATATTTGTTCAACTACTATGTGAAGATGCTTTTGAGACATCATAAGCAATTAAGCCAACTGAAAGTCCGGGAGTCAATTTCTCACGGATTGCAGTTCTATCCATTAAATCCGGAACTTTATAGTGCTTTTCTGGAGATTAGCTACATTTATTTGGTACCCAGTAAACTGCGATGGACCTTTGATGACTATTGCCAGAAGCAACCTTCTCTGATTCTATGGATTTTTGCATTATCCTTCGAGATGGGTTATGGGGGTTCCCTCCATAGAATCCGTAGACTGTTTGAGAAGGCATTGGAAAATGAAAATTTGCGTCGTTCTGTTCTTCTCTGGCGCTGCTACATTTCATATGAGCTGAACACAGCATGCGATCCTTCTTCAGCCCGACGAGTTTTCTTCCGTGCCATTCATTCCTGCCCATGGTCAAAAAAGCTATGGCTTGATGGTTTTCTCAAACTGAACTCCGTTTTGAGCGCGAAAGAGCTTTCGGATCTCCAAGAAGTTATGCGTGATAAAGAGCTCAATCTTCGGACTGATATCTATGAGATTCTTTTGCAAGATGAACTCACTCAAAAACCTCAAATCATCTTCAAGATGGATCATACAAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATTTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAGGCTTCTATCGCGGCAAACACATGGGTTGTTAGTGGTTCCCCTCAAACGAAAAAATTGCAGGATATTCTGCCTGGAATCATCAACCAATTGGGGCCCGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGGAGGTGCTGGTGCAGCAGCAGCAGCCAATGCCGAGGACGACGATGACGATGTTCCCGACCTTGTCGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAGTCAAGCCTCCTAG 4002 43.23 MEAPAEDKDSPLEEQTPKTSLFPLSFVANNPQSLSSPPNSSVPQWLCNSSFTTDLSVINDDLSSQNNVYPSLSADGNQEEAVEDEGGPSDRREVQKASRSYELLESSASDDDSEHEKRKKRKKKRRRRRNESEERGGFGEYGSRKSDVRAWADADGRPSKDYYFDSNGDRDNLAFGSLYRMDVARYRPLNRGEKPGLSFYGFSQWNKSSSALDRDADADVLDSKVKSGGRYWSAKNAAIERHKNFKRVRIGFSRKTPDTLLDDFIPLLDVQTSNNIEESWEDEVLRKTREFNKLTREHPHDEKAWLAFAEFQDKVAAMQPQKGARLQTLEKKISILEKAAELNPENEELLLYLLKTYQNRDNIDVVISRWEKILMQNSGSYKLWREFLHLIQGEFSRFKVSDMRQMYAHAIQALSAACNQHIRQANQTAKPSVEHDLIQLELGLVDIFMSLCRFEWQAGYQELATALFQAEIEFSLFCPALHLNDRSKQRLFEHFWNTDAERVGEEGALGWSTWLEKEEENRQKAMREEALEADEKGGWTGWSDPPPKEKKNSDGTETTAEMGVVAEETMEEYVEEEDIEKEDSTEALLKVLGINADAGVDEEVKDASTWARWSKEESLRDCEQWMPIRAKTADVIHDEGMPDGETNEQFLRVILYEDVKEYLFSLISSEARLSLIYQLIEFFSGKIYSRASSNSSSWMERILSLEVLPEDILHHLRSVHDILNKRQSSSSSSTLEVLVGGSDNLSQMSDMMKFLRNAILLCLTAFPRNYILEEAALIAEELFVTKMNSCNSSVTPCRSLAKNLLKSDRQDMLLCGVYARREATYGNIDHARKVFDMALASVESLPVDQKSNAPLLYFWYAELELANDHHNGHNSLNRAVHILSCLGSGTAYSPFKCQPSSLQLLRAHQGFKEKIREVRSTWLHGVIDDSSVALISSAALFEELTTGYNAGLEVLDQAFSMVLPERRKQSYQLEYLFNYYVKMLLRHHKQLSQLKVRESISHGLQFYPLNPELYSAFLEISYIYLVPSKLRWTFDDYCQKQPSLILWIFALSFEMGYGGSLHRIRRLFEKALENENLRRSVLLWRCYISYELNTACDPSSARRVFFRAIHSCPWSKKLWLDGFLKLNSVLSAKELSDLQEVMRDKELNLRTDIYEILLQDELTQKPQIIFKMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGGGAGAAAAANAEDDDDDVPDLVEGQTFEAAAEESQAS 1333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26923138 26937655 - CrPI670011_01g013740.1 Cre01g1374 488919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1374 1333 SMART NAC_2 1207 1262 IPR002715 -
Cre01g1374 1333 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL 20 1159 IPR013633 GO:0031048(PANTHER)|GO:0071013(PANTHER)|GO:1902369(PANTHER)
Cre01g1374 1333 Gene3D - 1219 1275 IPR038187 -
Cre01g1374 1333 CDD NAC_BTF3 1176 1290 - -
Cre01g1374 1333 MobiDBLite consensus disorder prediction 15 44 - -
Cre01g1374 1333 MobiDBLite consensus disorder prediction 1 44 - -
Cre01g1374 1333 MobiDBLite consensus disorder prediction 522 560 - -
Cre01g1374 1333 SUPERFAMILY TPR-like 984 1110 IPR011990 GO:0005515(InterPro)
Cre01g1374 1333 FunFam Transcription factor BTF3 homolog 1219 1275 - -
Cre01g1374 1333 SMART hat_new_1 361 393 IPR003107 GO:0006396(InterPro)
Cre01g1374 1333 SMART hat_new_1 913 944 IPR003107 GO:0006396(InterPro)
Cre01g1374 1333 SMART hat_new_1 282 314 IPR003107 GO:0006396(InterPro)
Cre01g1374 1333 SMART hat_new_1 826 866 IPR003107 GO:0006396(InterPro)
Cre01g1374 1333 SMART hat_new_1 1059 1093 IPR003107 GO:0006396(InterPro)
Cre01g1374 1333 MobiDBLite consensus disorder prediction 1292 1333 - -
Cre01g1374 1333 Pfam NAC domain 1207 1262 IPR002715 -
Cre01g1374 1333 MobiDBLite consensus disorder prediction 62 143 - -
Cre01g1374 1333 ProSiteProfiles NAC A/B domain profile. 1204 1268 IPR002715 -
Cre01g1374 1333 MobiDBLite consensus disorder prediction 84 117 - -
Cre01g1374 1333 Coils Coil 515 536 - -
Cre01g1374 1333 Gene3D Tetratricopeptide repeat domain 292 480 IPR011990 GO:0005515(InterPro)
Cre01g1374 1333 Gene3D Tetratricopeptide repeat domain 967 1141 IPR011990 GO:0005515(InterPro)
Cre01g1374 1333 Pfam NRDE-2, necessary for RNA interference 287 684 IPR013633 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1374 K26109 - - csv:101210989 2049.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1374 Cre-Chr1:26923138 Cre01g1587 Cre-Chr1:28956348 4.70E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g977 . . Bda06g00836 . . . . Bma12g01254 Cmo13g01002 Cmo18g00069 . . . . . Cpe20g00045 . . . . . . . . . . . . . . . . . . . Lsi02g00262 Csa01g00514 Chy12g01570 Cme12g02028 . Blo15g00047 . . Bpe07g01061 . . . . . . Cma13g01108 Cma18g00092 Car13g00801 Car18g00082 Cpe09g01098 . Bhi08g01334 Tan05g2153 . Lac10g0316 Hepe07g2327 . . Cla01g01469 . Cec01g1577 Cco01g1625 . . Cre01g1374 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010555 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32