Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1377 | ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCTGATGCAGAGGTCGTTTATCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCACCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGTCATCATCAACAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAATATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCAGAGAATTATTAGCCATAATCATCATCAAAATTTAGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAGTAATAGCAACAATAATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTGCCTAAAATTTGA | 1224 | 39.13 | MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVYLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQIFSTTIDHHHHDGADKYSTKTTIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDSNSNNNDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHPLPKI | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 26983274 | 26985427 | + | CrPI670011_01g013770.1 | Cre01g1377 | 488922 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1377 | 407 | MobiDBLite | consensus disorder prediction | 295 | 314 | - | - | |
Cre01g1377 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cre01g1377 | 407 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 96 | 130 | - | - | |
Cre01g1377 | 407 | SMART | c2h2final6 | 100 | 130 | IPR013087 | - | |
Cre01g1377 | 407 | SMART | c2h2final6 | 136 | 163 | IPR013087 | - | |
Cre01g1377 | 407 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cre01g1377 | 407 | FunFam | protein indeterminate-domain 12-like | 36 | 106 | - | - | |
Cre01g1377 | 407 | Coils | Coil | 322 | 384 | - | - | |
Cre01g1377 | 407 | MobiDBLite | consensus disorder prediction | 195 | 217 | - | - | |
Cre01g1377 | 407 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 80 | IPR036236 | - | |
Cre01g1377 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cre01g1377 | 407 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 369 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre01g1377 | 407 | Gene3D | Classic Zinc Finger | 47 | 132 | - | - | |
Cre01g1377 | 407 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 135 | 159 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1377 | Cre-Chr1:26983274 | Cre08g1467 | Cre-Chr8:27543014 | 2.50E-60 | dispersed | |
Cre01g1606 | Cre-Chr1:29131245 | Cre01g1377 | Cre-Chr1:26983274 | 8.70E-110 | transposed | |
Cre09g1848 | Cre-Chr9:36885334 | Cre01g1377 | Cre-Chr1:26983274 | 1.40E-95 | transposed | |
Cre01g1377 | Cre-Chr1:26983274 | Cre11g0573 | Cre-Chr11:2839629 | 2.20E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53028 | None | None | None | None | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1377 | K25871 | - | csv:101210748 | 735.332 |