Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1377 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCTGATGCAGAGGTCGTTTATCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCACCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGTCATCATCAACAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAATATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCAGAGAATTATTAGCCATAATCATCATCAAAATTTAGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAGTAATAGCAACAATAATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTGCCTAAAATTTGA 1224 39.13 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVYLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQIFSTTIDHHHHDGADKYSTKTTIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDSNSNNNDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHPLPKI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26983274 26985427 + CrPI670011_01g013770.1 Cre01g1377 488922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1377 407 MobiDBLite consensus disorder prediction 295 314 - -
Cre01g1377 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cre01g1377 407 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cre01g1377 407 SMART c2h2final6 100 130 IPR013087 -
Cre01g1377 407 SMART c2h2final6 136 163 IPR013087 -
Cre01g1377 407 SMART c2h2final6 57 79 IPR013087 -
Cre01g1377 407 FunFam protein indeterminate-domain 12-like 36 106 - -
Cre01g1377 407 Coils Coil 322 384 - -
Cre01g1377 407 MobiDBLite consensus disorder prediction 195 217 - -
Cre01g1377 407 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Cre01g1377 407 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cre01g1377 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 369 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre01g1377 407 Gene3D Classic Zinc Finger 47 132 - -
Cre01g1377 407 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1377 Cre-Chr1:26983274 Cre08g1467 Cre-Chr8:27543014 2.50E-60 dispersed
Cre01g1606 Cre-Chr1:29131245 Cre01g1377 Cre-Chr1:26983274 8.70E-110 transposed
Cre09g1848 Cre-Chr9:36885334 Cre01g1377 Cre-Chr1:26983274 1.40E-95 transposed
Cre01g1377 Cre-Chr1:26983274 Cre11g0573 Cre-Chr11:2839629 2.20E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53028 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1377 K25871 - csv:101210748 735.332