Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1386 ATGCAAACCCAGATGGGAACTTGTTTCATTTCTTTCTTTCTTTTGGGATTCTGTTTTCTACTTCCCACTGTGAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCTGCTGTGGGTGGCCGAACTCTTATGCTTTGGAATGTGACTGATCAGAACCCCTGTTCTTGGCCTGGGATTCAATGCGAGGACAATCGTGTCACTGTTCTTCGTCTTCCCGGAGCGGCGCTTTTCGGTCAATTACCGAATGGGATTTTTGGGAACTTGACTCACCTTCGTACACTCAGCCTTCGGCTCAATGCCCTTTCCGGTCAGCTCCCCTCAGATCTCTCTGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCTCGTCCCTGATTTCTTGTTTCAGCTTCGTGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCTGGGGAGATCTCTTTCGGGTTCAACAATTTGACCCGTCTCAAAACTCTGTTCCTTGAGAAAAATCATCTCTCTGGGTCTATCCCGGACTTGAAGATCCCTCTGGATCAGTTCAACGTTTCTAACAACCAGTTAAATGGGTCGGTACCTAAGGGATTGCAGTCGTTTTCTTCGAGTTCCTTTTTGGGGAATTCTCTCTGTGGGCGTCCTCTTGAGTCTTGCTCTGGTGATCTTGTTGTGCCGACAGGGGAGGTTGGGAGCAATGGCGGCTCTGGACACAAGAAGAAGTTGTCAGGGGGAGCCATTGCTGGGATTGTTATTGGATCTGTACTGGGTTTTGTGTTGATACTTGTAATCTTAATGCTTTTGTGCCGAAAGAAGAGTTCTAAGAAAACGAGTTCAGTTGATGTAGCCACAGTGAAGCATCCTGAAGTGGAAATTCATGGCGGTAAGCCAGCTGAGGAGATTGAAAATGGGGGTTACAGTAATGGTTATGCTGTGCCAGCCACTGCTGCTGCTGCTTCTGCTGCAACAGTGGCGGCCGGTACTGCAAAGGGGGAAGTGAATGCCAATGGTACTGGGACTAAAAAATTGGTGTTTTTTGGCAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCTGAAGTGTTGGGGAAAGGAACCTTTGGGACTGCTTACAAAGCAGTTTTGGAAGTGGGTTCTGTTGTGGCTGTGAAGAGGTTGAAGGATGTTACTATAACAGAGAGGGAATTCAGAGAGAAGATTGAAGCTGTTGGATCTATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTATCTGCTCTTTTACATGGAAACAAAGGAGCTGGCAGGACTCCATTGAATTGGGAAATCAGATCTGGAATTGCGCTTGGAGCTGCTCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCTTCCAATATTCTTCTAACAAAATCCTATGATTCTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCACCTTCCAGCCCCACCAGAGTTGCTGGTTACCGTGCACCAGAGGTCACCGATCCTCGTAAAGTATCCCACAAGGCTGATGTCTATAGCTTTGGCGTATTGCTTTTGGAGCTTTTGACAGGAAAGGCTCCTACTCACTCCCTTTTAAACGAGGAAGGAGTTGATCTACCCAGATGGGTGCAGTCAGTTGTTAGGGAGGAGTGGACTTCCGAAGTTTTTGACCTCGAGCTTCTTAGGTACCAAAACGTTGAGGAGGAGATGGTTCAGCTATTGCAGCTTGCAGTCGATTGTGCAGCTCAGTATCCTGATAAGCGTCCTACTATGTCCGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCCTTCACGAAGCTGTCAATCCACAACCCGACGCTGCTCATGACTCAGACGATGTGTCTTCTAGGTGA 1989 46.76 MQTQMGTCFISFFLLGFCFLLPTVKPDLASDRTALLALRSAVGGRTLMLWNVTDQNPCSWPGIQCEDNRVTVLRLPGAALFGQLPNGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNEFSGLVPDFLFQLRDLVRLNLASNNFSGEISFGFNNLTRLKTLFLEKNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGRPLESCSGDLVVPTGEVGSNGGSGHKKKLSGGAIAGIVIGSVLGFVLILVILMLLCRKKSSKKTSSVDVATVKHPEVEIHGGKPAEEIENGGYSNGYAVPATAAAASAATVAAGTAKGEVNANGTGTKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDSRVSDFGLAHLVGPPSSPTRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPTMSEVTKRIEELRQSSLHEAVNPQPDAAHDSDDVSSR 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27109836 27112321 + CrPI670011_01g013860.1 Cre01g1386 488931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1386 662 FunFam Probable inactive receptor kinase RLK902 28 185 - -
Cre01g1386 662 Gene3D Phosphorylase Kinase; domain 1 336 442 - -
Cre01g1386 662 Gene3D Transferase(Phosphotransferase) domain 1 443 658 - -
Cre01g1386 662 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1386 662 SUPERFAMILY Protein kinase-like (PK-like) 372 642 IPR011009 -
Cre01g1386 662 Pfam Protein kinase domain 372 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1386 662 Gene3D Ribonuclease Inhibitor 187 230 IPR032675 -
Cre01g1386 662 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cre01g1386 662 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Cre01g1386 662 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cre01g1386 662 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Cre01g1386 662 FunFam pollen receptor-like kinase 1 337 442 - -
Cre01g1386 662 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524(InterPro)
Cre01g1386 662 CDD STKc_IRAK 374 637 - -
Cre01g1386 662 PANTHER OS05G0588300 PROTEIN 13 653 IPR050994 -
Cre01g1386 662 MobiDBLite consensus disorder prediction 638 662 - -
Cre01g1386 662 FunFam Probable inactive receptor kinase At1g48480 443 645 - -
Cre01g1386 662 SUPERFAMILY L domain-like 31 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1386 Cre-Chr1:27109836 Cre11g0754 Cre-Chr11:4739809 2.90E-130 dispersed
Cre01g0363 Cre-Chr1:3024120 Cre01g1386 Cre-Chr1:27109836 2.90E-54 transposed
Cre05g1308 Cre-Chr5:13846341 Cre01g1386 Cre-Chr1:27109836 4.60E-165 transposed
Cre09g1674 Cre-Chr9:34483421 Cre01g1386 Cre-Chr1:27109836 6.20E-130 transposed
Cre01g1386 Cre-Chr1:27109836 Cre06g2277 Cre-Chr6:30701826 3.00E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63825 PF00069 Pkinase 4.60E-39 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1386 - - - 0.0