Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1402 | ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCATTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCGACTCGCGACGCCGAAATCCTCGAAAGGAAAGATTCAGGGTCGGGCAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCACCAAATAAGGAATAACAACACCAACAACAACAACAACTTTGCTGAAAAAAATACCAATAACATCAACAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGCGGCGGTGGCGGCAGCAGTGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA | 1221 | 45.13 | MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTNNNNNFAEKNTNNINNNINNSASLQLMHCPAAALRGGGGGGGSSGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEEEEGGGGGGGGGGCGESETLQLFPLCSDTRNGEIIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 27295689 | 27298746 | + | CrPI670011_01g014020.1 | Cre01g1402 | 488947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1402 | 406 | FunFam | WUSCHEL-related homeobox 4 | 81 | 148 | - | - | |
Cre01g1402 | 406 | SMART | HOX_1 | 79 | 146 | IPR001356 | GO:0003677(InterPro) | |
Cre01g1402 | 406 | Coils | Coil | 319 | 346 | - | - | |
Cre01g1402 | 406 | MobiDBLite | consensus disorder prediction | 329 | 344 | - | - | |
Cre01g1402 | 406 | Gene3D | - | 81 | 148 | - | - | |
Cre01g1402 | 406 | Pfam | Homeodomain | 82 | 141 | IPR001356 | GO:0003677(InterPro) | |
Cre01g1402 | 406 | SUPERFAMILY | Homeodomain-like | 81 | 148 | IPR009057 | - | |
Cre01g1402 | 406 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 76 | 402 | IPR044555 | GO:0003700(InterPro)|GO:0099402(InterPro) | |
Cre01g1402 | 406 | Coils | Coil | 230 | 250 | - | - | |
Cre01g1402 | 406 | CDD | homeodomain | 83 | 143 | IPR001356 | GO:0003677(InterPro) | |
Cre01g1402 | 406 | ProSiteProfiles | 'Homeobox' domain profile. | 87 | 142 | IPR001356 | GO:0003677(InterPro) | |
Cre01g1402 | 406 | MobiDBLite | consensus disorder prediction | 329 | 353 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1402 | Cre-Chr1:27295689 | Cre02g2369 | Cre-Chr2:37107072 | 7.20E-23 | dispersed | |
Cre03g0475 | Cre-Chr3:3182660 | Cre01g1402 | Cre-Chr1:27295689 | 1.80E-25 | transposed | |
Cre04g1954 | Cre-Chr4:37025344 | Cre01g1402 | Cre-Chr1:27295689 | 1.20E-14 | transposed | |
Cre08g1554 | Cre-Chr8:28189291 | Cre01g1402 | Cre-Chr1:27295689 | 2.20E-24 | transposed | |
Cre01g1402 | Cre-Chr1:27295689 | Cre06g2301 | Cre-Chr6:30968370 | 9.10E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53032 | PF00046 | Homeodomain | 1.70E-19 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1402 | - | - | - | 0.0 |