Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1402 ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCATTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCGACTCGCGACGCCGAAATCCTCGAAAGGAAAGATTCAGGGTCGGGCAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCACCAAATAAGGAATAACAACACCAACAACAACAACAACTTTGCTGAAAAAAATACCAATAACATCAACAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGCGGCGGTGGCGGCAGCAGTGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1221 45.13 MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTNNNNNFAEKNTNNINNNINNSASLQLMHCPAAALRGGGGGGGSSGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEEEEGGGGGGGGGGCGESETLQLFPLCSDTRNGEIIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27295689 27298746 + CrPI670011_01g014020.1 Cre01g1402 488947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1402 406 FunFam WUSCHEL-related homeobox 4 81 148 - -
Cre01g1402 406 SMART HOX_1 79 146 IPR001356 GO:0003677(InterPro)
Cre01g1402 406 Coils Coil 319 346 - -
Cre01g1402 406 MobiDBLite consensus disorder prediction 329 344 - -
Cre01g1402 406 Gene3D - 81 148 - -
Cre01g1402 406 Pfam Homeodomain 82 141 IPR001356 GO:0003677(InterPro)
Cre01g1402 406 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cre01g1402 406 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 76 402 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cre01g1402 406 Coils Coil 230 250 - -
Cre01g1402 406 CDD homeodomain 83 143 IPR001356 GO:0003677(InterPro)
Cre01g1402 406 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677(InterPro)
Cre01g1402 406 MobiDBLite consensus disorder prediction 329 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1402 Cre-Chr1:27295689 Cre02g2369 Cre-Chr2:37107072 7.20E-23 dispersed
Cre03g0475 Cre-Chr3:3182660 Cre01g1402 Cre-Chr1:27295689 1.80E-25 transposed
Cre04g1954 Cre-Chr4:37025344 Cre01g1402 Cre-Chr1:27295689 1.20E-14 transposed
Cre08g1554 Cre-Chr8:28189291 Cre01g1402 Cre-Chr1:27295689 2.20E-24 transposed
Cre01g1402 Cre-Chr1:27295689 Cre06g2301 Cre-Chr6:30968370 9.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53032 PF00046 Homeodomain 1.70E-19 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1402 - - - 0.0