Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1406 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTTTCTTCGCCTGATAAGCTGCCGTCTCGCTCCCGAACGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTTTCTAGCAGAGATGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTAGAGAGGATCCTGAGGCAGCTCAGATAGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTGTTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAAATGGGGACGGAATCCCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGCGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACGGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAGGGACCACAGTACACAGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCTTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCACTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCGAAGTTTCGGAATATCAGTGCCACAAAGGAATATGATTCTCCCAATGTCGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAAAAGCTTCATGACGTGTTACTTGAAAGTGGTGTGGTTGCTCCCCCTAACTTGTTTACTGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGAATGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACCTTAAACCTCTGGAATTTAACCTTTCTCTCGATTCAAGAGAAGCAGCCGGACAACCTATAGCCTTACCTTTTGAGGTAACACCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACCGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCTACTCTTTATGAGCAGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCAGTTGGTAACGAAAGCACAAAATCCGATATTACCCTTGATGATGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGACTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACGCCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCTAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCTGGAACCGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGTGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTAGATCCTGCCATTGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCTGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGGTAGTAGTCGTGACAAGGCTCGATTATTGCAAGTTGCTGAAGACCCATCAGGCTAG 3036 45.59 MKNLLKKFHIMSSGQSDDAAEGSTSSRSSKLMEVSSPDKLPSRSRTTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMGTESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYGLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKFRNISATKEYDSPNVDKGPSRDFASKSNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRMHSRASPTHGQQLHLKPLEFNLSLDSREAAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLYEQRGSGDREHDACGENSEGERISDRSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNAPAGSSRDKARLLQVAEDPSG 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27318131 27330919 - CrPI670011_01g014060.1 Cre01g1406 488951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1406 1011 MobiDBLite consensus disorder prediction 672 699 - -
Cre01g1406 1011 SUPERFAMILY Protein kinase-like (PK-like) 703 972 IPR011009 -
Cre01g1406 1011 FunFam Serine/threonine-protein kinase isoform 1 713 800 - -
Cre01g1406 1011 SMART serkin_6 722 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 MobiDBLite consensus disorder prediction 520 568 - -
Cre01g1406 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524(InterPro)
Cre01g1406 1011 MobiDBLite consensus disorder prediction 520 538 - -
Cre01g1406 1011 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 PANTHER SERINE-THREONINE PROTEIN KINASE 68 975 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre01g1406 1011 MobiDBLite consensus disorder prediction 378 445 - -
Cre01g1406 1011 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 MobiDBLite consensus disorder prediction 1 116 - -
Cre01g1406 1011 MobiDBLite consensus disorder prediction 16 44 - -
Cre01g1406 1011 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1406 1011 FunFam Serine/threonine-protein kinase CTR1 801 984 - -
Cre01g1406 1011 MobiDBLite consensus disorder prediction 978 1011 - -
Cre01g1406 1011 MobiDBLite consensus disorder prediction 380 406 - -
Cre01g1406 1011 MobiDBLite consensus disorder prediction 672 705 - -
Cre01g1406 1011 MobiDBLite consensus disorder prediction 97 116 - -
Cre01g1406 1011 Gene3D Transferase(Phosphotransferase) domain 1 801 986 - -
Cre01g1406 1011 CDD STKc_MAP3K-like 728 974 - -
Cre01g1406 1011 MobiDBLite consensus disorder prediction 51 88 - -
Cre01g1406 1011 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Cre01g1406 1011 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1406 Cre-Chr1:27318131 Cre05g1949 Cre-Chr5:31636477 1.70E-190 dispersed
Cre01g1406 Cre-Chr1:27318131 Cre10g2049 Cre-Chr10:35190531 1.10E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63826 PF07714 PK_Tyr_Ser-Thr 5.40E-67 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1406 - - - 0.0