Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1407 ATGCTGCAATTCAATGGCGGAGAACTGAATCAGAACCGAGGAAGGCGACCGCTGGTTTTATACGGTTTGATACATATTGTAATCGAATTGACGTTAATCTGCTCTACCATGGATCGCCTCAATAAGGGTGATAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTGTTGGGAAAGGAAGCTATGGAGTTGTTGGTTCTGCAATTGATACCCAGACTGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATTCGTATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCAAATATTGTAGAGATAAAACATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCCAAGCAGCATAAGTTTTTTCTCTACCAGCTTCTTAGTGGCCTAAAATATATTCATGCGGCAAATGTCCTTCATCGAGATTTGAAGCCGAAAAACATACTTGCTAATGCTGACTGCAGACTGAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGTGATGCGCCATCTACTATTTTTTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCGATAGATATATGGAGTATCGGATGCATATTTGCGGAAATGCTTACGGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGAACCTGAGGCCATAGCGAAGATTCGGAATGAGAAGGCAAGAAGGTACCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCATTGGCACTTTGTTTACTGGAACGTCTCCTGGCATTTGATCCCAAATGTCGTCTCACAGCTGCAGAGGCACTTGCTGATCCTTACTTCAACGGTATGGCGAAACCAGAACTTGAGCCTTCTATTCAACCAATTTCGAAACTTGAGTTTGAGTTTGAGAAGAGGAGGTTATCAAAAGATGATGTTAGAGAGTTGATTTATGCGGAGATTTTAGAGTATCATCCCCAGATGCGTCAGGAGTGTCTACGTGATGGAGATCATCAATCTACCTTTATGTATCCAAGTGGCGTTGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCATGGTATAGGTGAAAGAAGAAGTCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGTCCTACTGAGCAGAACAACACTGAGAATAAAACTGATTTTGAAAGGGGGAAAGATAAGAGTTCTTATCTCTTGAAAAGTGCTAGTATTAGTGCATCGAGGTGTGTTGGGGTAACACCAAAGGAGAAATCTGAGGCGGAAGAAACGAGTACTGAAGTGAAAAATGAAGCAGTGGATGGCTTGTCTCAGAAGATCGCAGTCCTTCAGACTTGA 1569 41.3 MLQFNGGELNQNRGRRPLVLYGLIHIVIELTLICSTMDRLNKGDKQSEFFTEYGEASRYQIQEVVGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPEPEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPLALCLLERLLAFDPKCRLTAAEALADPYFNGMAKPELEPSIQPISKLEFEFEKRRLSKDDVRELIYAEILEYHPQMRQECLRDGDHQSTFMYPSGVDRFKLQFAHLEEHHGIGERRSPLQRQNISLPRERVSPTEQNNTENKTDFERGKDKSSYLLKSASISASRCVGVTPKEKSEAEETSTEVKNEAVDGLSQKIAVLQT 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27341812 27346539 + CrPI670011_01g014070.1 Cre01g1407 488952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1407 522 ProSitePatterns Protein kinases ATP-binding region signature. 65 89 IPR017441 GO:0005524(InterPro)
Cre01g1407 522 FunFam Mitogen-activated protein kinase 145 373 - -
Cre01g1407 522 Pfam Protein kinase domain 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1407 522 CDD STKc_TDY_MAPK 58 395 - -
Cre01g1407 522 SMART serkin_6 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1407 522 FunFam Mitogen-activated protein kinase 47 152 - -
Cre01g1407 522 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Cre01g1407 522 MobiDBLite consensus disorder prediction 432 470 - -
Cre01g1407 522 ProSitePatterns MAP kinase signature. 94 197 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1407 522 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 56 391 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre01g1407 522 MobiDBLite consensus disorder prediction 487 507 - -
Cre01g1407 522 Gene3D Transferase(Phosphotransferase) domain 1 145 373 - -
Cre01g1407 522 ProSiteProfiles Protein kinase domain profile. 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1407 522 MobiDBLite consensus disorder prediction 439 460 - -
Cre01g1407 522 MobiDBLite consensus disorder prediction 492 506 - -
Cre01g1407 522 Gene3D Phosphorylase Kinase; domain 1 75 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1407 Cre-Chr1:27341812 Cre03g1273 Cre-Chr3:18957520 1.70E-186 dispersed
Cre11g1096 Cre-Chr11:8442594 Cre01g1407 Cre-Chr1:27341812 3.00E-24 dispersed
Cre01g1407 Cre-Chr1:27341812 Cre06g2306 Cre-Chr6:31024317 9.40E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63827 PF00069 Pkinase 1.80E-67 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1407 - - - 0.0