Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1413 ATGCAACTGTGTTCGAATGGTATGGCGAGTGTCGGGCTATTGTTTGAGTTTCAAATGGTGAGGTGTTGTTTGCTTTGGAGAACCATTTTCTTTTGCCAAGATCCATTGAGCTTGTTAAGCATCCAATCTTTAGCTTTATGCTTGCCGCATTCTTGTCTCTGCTTCCACATTCGCTATCCCTCCCGCAATTTTCTCCGCCATTATCGATATCTTGAGCTTTTGATCAGCTCAACAACATTTGAGGTCCAAAAGAAGAGAAAAGAAAGTCAAAACCCCCAAACCCCCAAACTTCACTTTGAAAATCGGTGGTGTTCTAATCAAATGGGGATAAAAGATCTCCTCAGATTCATGAAGCCCTACATTGTGCCCATTCACATCAAGAAATACGCGGGCAAACGTGTGGGCATCGACGCCTATTCCTGGCTGCACAAGGGAGCTTATTCTTGTAGTATGGAGATTTGCCTTAATTCTGACAGTGATAAGAAATGGCGATATTTAGACTACTGTATGCATAGAATCAATCTCCTTCGTCATTACAAGATAGTCCCAGTTGTTGTTTTTGATGGTGGGAATGTTCCGTGTAAGTCAGTCACTGAGCAAGAGAGGCACAGAAGAAGAGAGGCGAACAGGGAATTAGCAATGGAGAAGTTGAAGGAAGGGAATGTTGGTGCTGCCTCTGAGCTTTTCCAGCTTCTTAGAGAACAAAACATCGAATTTGTGGTAGCCCCTTATGAGGCTGATGCACAGTTAGCATATCTTTCCAGCCTCGGAACACAAAATGGAGGAATTGCAGCTGTGATTACAGAGGATAGTGACTTGATTGCATACGGTTGTAAAGCTACAATCTTTAAGATGGACCGATATGGCAATGGTGAAGAGATGATGCTAGATAAGATTTTTGAATCTGAAGGCTGCACACCTTCCTTCAGAAATTTTGATAAGGAATTGCTCACGGGCATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCTTCTGTTCCTGGAATTGGCATTGCAAAGGCTTATGCCCTGGTCTCCAAGTATCGGAATTTGGAACGTGTTCTTTCTGTTTTGAAGCTTGAGAAAAAGAAGCAAATGCCTGAAGATTACTTCAAACTTTTCAGACAAGCTATGGCAGTCTTTCAGCATGCACAAATATATGATGCCGAAACGAGGAAGCTTAGACACATGAAACCACTTCCCCTAGAGCTTCTGCAGTCCCTAGATGAAGAAATTGATTTTTTGGGACCAGATATGCCTCCTTCAATAGCTGTTTCAATAGCCGAAGGAAGGTTAAACCCCATAACTATGGAGGCTTTTAACTATTTCTCAAGCGAAGAATGTCGCCAAGACCTTAAACAAATAAAAAATAACGAAAGACTTCCGAGGACCGAGGCGGTTGAGGTATCTGTGAAGGACAGTTGTTTTATGGTCTTCGTCGGTAAGGACAGAGAAAGACATATCCCGGATAAGAGAATTAAACCCGTCGTAGGTGATAAGAATTCTAAAGAAGAATTGGCACTTGAGAAGCTAATCACACCGTTGAATGTTCAAAGAACAAATGAAGACAAAACCGATCTTGACTACAAATCAATGAAGATTCCTGACAACAATCCATTCAAGAGAAGGAAAGTTGATGAATGGCACTCGGATCTCACGCAGAGTGTTGATGAAGAAGTTTCAGTCACAAGTGAGGATGAATTTGAGGAACTATCGTGTGAGACTCCAGATAAGTTACTATTAAAATCTTCCAGAAAAAGAAAACTAAACGAAGCTCTCTCTGAACAAATGGAGAATGTTACTGAGCTTATATCAGGGATAACCCAAGAAGAGGATTTGGTGCTGTTAGAACAGACACCAGAATCCCAAAAGAGTGTAAGCTCAAAGACAAGCAGTGTCATAGGTAGAAAAAGAGTTGTAGGCAAGGAGAACAAGAGAAAAAGCAACTGTAATAATTCAGATATCACCTCAGATTGGAAGATAGATGGATACAACATTACAGCTCATGAAGAACTAAAGCTTTCTAGGGATTCAGACTCATTGTAG 2043 41.36 MQLCSNGMASVGLLFEFQMVRCCLLWRTIFFCQDPLSLLSIQSLALCLPHSCLCFHIRYPSRNFLRHYRYLELLISSTTFEVQKKRKESQNPQTPKLHFENRWCSNQMGIKDLLRFMKPYIVPIHIKKYAGKRVGIDAYSWLHKGAYSCSMEICLNSDSDKKWRYLDYCMHRINLLRHYKIVPVVVFDGGNVPCKSVTEQERHRRREANRELAMEKLKEGNVGAASELFQLLREQNIEFVVAPYEADAQLAYLSSLGTQNGGIAAVITEDSDLIAYGCKATIFKMDRYGNGEEMMLDKIFESEGCTPSFRNFDKELLTGMCVLAGCDFLPSVPGIGIAKAYALVSKYRNLERVLSVLKLEKKKQMPEDYFKLFRQAMAVFQHAQIYDAETRKLRHMKPLPLELLQSLDEEIDFLGPDMPPSIAVSIAEGRLNPITMEAFNYFSSEECRQDLKQIKNNERLPRTEAVEVSVKDSCFMVFVGKDRERHIPDKRIKPVVGDKNSKEELALEKLITPLNVQRTNEDKTDLDYKSMKIPDNNPFKRRKVDEWHSDLTQSVDEEVSVTSEDEFEELSCETPDKLLLKSSRKRKLNEALSEQMENVTELISGITQEEDLVLLEQTPESQKSVSSKTSSVIGRKRVVGKENKRKSNCNNSDITSDWKIDGYNITAHEELKLSRDSDSL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27376798 27383987 - CrPI670011_01g014130.1 Cre01g1413 488958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1413 680 FunFam Exonuclease 1, putative 108 306 - -
Cre01g1413 680 Coils Coil 589 609 - -
Cre01g1413 680 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 232 249 IPR006084 -
Cre01g1413 680 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 183 202 IPR006084 -
Cre01g1413 680 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 131 145 IPR006084 -
Cre01g1413 680 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 317 332 IPR006084 -
Cre01g1413 680 SUPERFAMILY PIN domain-like 109 327 IPR029060 -
Cre01g1413 680 CDD PIN_EXO1 108 301 IPR044752 GO:0046872(InterPro)
Cre01g1413 680 Gene3D - 310 383 - -
Cre01g1413 680 FunFam exonuclease 1 310 383 - -
Cre01g1413 680 Pfam XPG I-region 236 327 IPR006086 GO:0004518(InterPro)
Cre01g1413 680 SMART HhH_4 314 347 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cre01g1413 680 MobiDBLite consensus disorder prediction 618 633 - -
Cre01g1413 680 SMART xpgn3 108 209 IPR006085 GO:0004518(InterPro)
Cre01g1413 680 ProSitePatterns XPG protein signature 2. 236 250 IPR019974 GO:0016788(InterPro)
Cre01g1413 680 MobiDBLite consensus disorder prediction 618 653 - -
Cre01g1413 680 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 313 444 IPR036279 -
Cre01g1413 680 CDD H3TH_FEN1-like 315 387 - -
Cre01g1413 680 Gene3D - 108 304 - -
Cre01g1413 680 SMART xpgineu 233 305 IPR006086 GO:0004518(InterPro)
Cre01g1413 680 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 108 594 IPR006084 GO:0017108(PANTHER)
Cre01g1413 680 Pfam XPG N-terminal domain 108 207 IPR006085 GO:0004518(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1413 K10746 - - csv:101208542 864.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1413 Cre-Chr1:27376798 Cre03g0999 Cre-Chr3:8830011 6.60E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30