Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1415 ATGTTGAAGGATCCATGGATCCCGAGAAGCTCAACCTTTAAAACTATCAGTCTGCATCCTAATTTAGAAGAAGCATTAGTTAACCTGATGGAAGCTGGCATCTTCATCTTACCTCGTGAAGCTTTCTTCCTGCTCACTGCGTTACGAGAAACCCTAGACTTACTTCTTCGCAGCTTACGGCCACTGTTCCATGGGTACGAATCTCACATCTATTCTCATTTCCGGTTGTTTATCACTTTCCTCACCATCGTTATAACTATCCCTCTAACTTACAATATTGCATGGTTTCCAGAAGTTATGGCCTATATCGAGGAGGATATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTCCTAATCCAGATGCAAAGATGGAGGAAGTTGTGAAATCCGATAATCTGGAAGAAGATGCAAGGACAGAAGAAATTGTGAAGTCCGATAAGATGGAAGAAGAGGACCATCCCCAGCAAGCCCAAGCCATCCACGTTGAAGAACAAGCGAAGGAGAACATATCTGCTAAGGAGAAGGAAATTTCTTCAACTGAAAATGAAGATGAAGGGGATGTGGAGTTAGACCGCAAAAGACACTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGTAAGTCTACAATTGGAGGCCAGATACTTTTTCTTAGCAATCAGGTTGATGAGCGTACAATCCAAAAGTACGAAAAAGAAGCAAAAGACAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGAAGAGCGCATTTTGAAACCGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTCCCAAATATGATCAGTGGGGCATCCCAAGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCAAAGACTTTGGGTGTTGCTAAGCTTCTTGTTGTCGTGAATAAGATGGATGATCACACGGTACAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCGTGGTGGAATGGTCCGTGCTTCTTTGAAATCCTTGATACAATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATCGACAAGTTCAAGGACATGGGAACAACTGTTATGGGTAAAGTCGAATCTGGCACTGTGCGTGAGGGTGATTCCTTATTGGTTATGCCAAATAAGATACAAGTGAAAGTTACAGCTGTGATGTGTGATGAAAGTAAAGTCAAGAGTGCAGGACCGGGGGAGAATCTTCGTGTTAGAGTAGCTGGAATTGAAGAAGAAGATATAGCGTCTGGGTTTGTACTATCAAGCATTGCAAAACCAATACCTTGTGTTTCTGAGTTTGTTGCACAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCGGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAAATCATAGAGCTGCTACAGCAGATTGATCCGAAGACTAGAAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATTGAGAAGTTTTCTGATGTTCCTCAGCTCGGAAGATTTACACTTCGTACTGAAGGGAAGACAGTTGCCGTAGGAAAAGTCACTGATATTCCAGCTGCAAGCAATTAA 1884 41.61 MLKDPWIPRSSTFKTISLHPNLEEALVNLMEAGIFILPREAFFLLTALRETLDLLLRSLRPLFHGYESHIYSHFRLFITFLTIVITIPLTYNIAWFPEVMAYIEEDIRALELDPPDVNGVPNPDAKMEEVVKSDNLEEDARTEEIVKSDKMEEEDHPQQAQAIHVEEQAKENISAKEKEISSTENEDEGDVELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDDHTVQWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWNGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLVMPNKIQVKVTAVMCDESKVKSAGPGENLRVRVAGIEEEDIASGFVLSSIAKPIPCVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDIPAASN 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27406444 27416410 + CrPI670011_01g014150.1 Cre01g1415 488960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1415 627 Pfam Elongation factor Tu domain 2 440 506 IPR004161 GO:0005525(InterPro)
Cre01g1415 627 Coils Coil 223 243 - -
Cre01g1415 627 CDD eRF3_C_III 514 622 - -
Cre01g1415 627 MobiDBLite consensus disorder prediction 169 191 - -
Cre01g1415 627 Pfam GTP-eEF1A C-terminal domain-like 518 620 IPR054696 -
Cre01g1415 627 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 517 622 IPR009001 -
Cre01g1415 627 PRINTS GTP-binding elongation factor signature 200 213 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre01g1415 627 PRINTS GTP-binding elongation factor signature 295 306 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre01g1415 627 PRINTS GTP-binding elongation factor signature 339 348 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre01g1415 627 PRINTS GTP-binding elongation factor signature 279 289 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre01g1415 627 CDD eRF3_II 427 508 - -
Cre01g1415 627 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 196 425 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre01g1415 627 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 424 510 - -
Cre01g1415 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 431 IPR027417 -
Cre01g1415 627 CDD EF1_alpha 200 421 - -
Cre01g1415 627 Coils Coil 166 186 - -
Cre01g1415 627 Pfam Elongation factor Tu GTP binding domain 196 396 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre01g1415 627 Gene3D Translation factors 425 509 - -
Cre01g1415 627 MobiDBLite consensus disorder prediction 168 191 - -
Cre01g1415 627 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 252 267 IPR031157 -
Cre01g1415 627 SUPERFAMILY Translation proteins 420 512 IPR009000 -
Cre01g1415 627 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 175 420 - -
Cre01g1415 627 FunFam Putative translation elongation/initiation factor family protein 514 623 - -
Cre01g1415 627 PANTHER TRANSLATION FACTOR 195 620 IPR050100 GO:0003747(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0018444(PANTHER)
Cre01g1415 627 Gene3D - 176 419 IPR027417 -
Cre01g1415 627 Gene3D Translation factors 515 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1415 K03267 - - csv:101217809 914.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1415 Cre-Chr1:27406444 Cre02g2404 Cre-Chr2:37431991 2.50E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44