Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1430 ATGGATTTCAAGAGAACCCCTTTTCTTCTTATCATCATCTTCATCATCTTAACTCCCCAAACTCTGTCTTCAGACCAAAACTTTGAAGCTTCTGCTCCAAAATCCTGTGGGAAAGGTCCCAATATAAGCTACCCTTTTTGGATAGCTACTTCACACAGCCCCTTCTGTGGATTACCAAGCTTCGATATTGCCTGCAAAGATGAAAACCCAATTATCAGAATTTCAGAAGATGATTATATTATCAGAGACATTTTCTACAAAAACCATTCTTTTCTTTTGAAAAATGCTGCGGTTGACGATGAGAACTGCACAACTCCTCTTCATAATTTCAGCCTCCACGGAACCCCCTTCAATTACAGTTCAGTTCCTTATAATTTCTTCTTCTTCTACAGCTGTACTTCCCTTCCTTCCAATTATAGCTTCCCAATTAATTGTTCTAGCACAAGCAAACTCAATTCTTTTGCTGCTTTTAATGATGGATCCTTGGAGTCCATGAACTCAGCTTACCATTCTTGTAAATCCTCGGTTAAGGTGCCTGTGCACCTCAGTAATAACGAGGAAAATAATTTTCCTGGGTTGTACAGGAAGAGTTACTCTGATGTCTTGAAGAACGGTTTCAGTTTAAATTGGAGGAGTGCCCAAAATTGTAGCAACTGTGAGACAAGTGGTGGCCGATGTGGGATCAAAAGCAACAAGTTTGTTTGCTTTTGTTCTGATGGATCTCATCTCCAAACCTGCAAAGAGGGTGCATCTCCTTTGGGAATTACCATCATTCTGATAATCTCTGTTATCATCATCTCCATCTACTACACAAGAAAAAGCTTATCAAACAAAGACAAAATTGAGGAAAGTATAAGGAGTTATTCCACACAAACACCCAAGAGATATAGTTACTCAAAGCTGAAGAAAATCACAGACTCCTTCAAGAACAAACTTGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCCGACGGGCGCGATGTAGCTGTGAAACTTTTGAATGAGTCCAGTGAAAATGGCCAAGATTTTATGAACGAGGTTGTTAGCATCATCAGAACTTCACATGTAAATATAGCTTCACTCTTAGGTTTCTGCTACGAGAGGAAGAAAAGAGCTTTGATTTATGAATATATGCCTAGAGGGTCATTGGACAAGTATATATCACACCAAGGGCCACAGAGAAACAATGTTGAGTTGGATTGGAACACACTTTATAGCATCATTATTGGCGTGGCACGAGGCTTAGAGTACTTGCATCGTGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCGCACAACATACCTTTGGATAGTGATTTTTGTCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAAGGACAAAGAAAGTCATGTGTCAATGACAGGCGTAAAAGGGACGACAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTACAGCTACGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCCAATGACAATGATGGAGTGGGGCAGAGGAGTGAAGAGTACTTTCCTGATTGGATATATAAAGATCTTACACAAAGTGAAATAGATGGAGGGTGTTGGTGGGGAAGCACGGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGGCTGCATTGTATTCAAACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGTGATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAAATTGTTGGAACCTCCCGCCATTGAGCAGCCCCAACCTTCTTCCTCTTCATCCAACTGGATTTCTAATGATAGTTTGATATTCTAG 1875 41.12 MDFKRTPFLLIIIFIILTPQTLSSDQNFEASAPKSCGKGPNISYPFWIATSHSPFCGLPSFDIACKDENPIIRISEDDYIIRDIFYKNHSFLLKNAAVDDENCTTPLHNFSLHGTPFNYSSVPYNFFFFYSCTSLPSNYSFPINCSSTSKLNSFAAFNDGSLESMNSAYHSCKSSVKVPVHLSNNEENNFPGLYRKSYSDVLKNGFSLNWRSAQNCSNCETSGGRCGIKSNKFVCFCSDGSHLQTCKEGASPLGITIILIISVIIISIYYTRKSLSNKDKIEESIRSYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSTVYKGKLPDGRDVAVKLLNESSENGQDFMNEVVSIIRTSHVNIASLLGFCYERKKRALIYEYMPRGSLDKYISHQGPQRNNVELDWNTLYSIIIGVARGLEYLHRGCITRILHFDIKPHNIPLDSDFCPKISDFGLAKQCKDKESHVSMTGVKGTTGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNDNDGVGQRSEEYFPDWIYKDLTQSEIDGGCWWGSTEEEEEMARKMIIVGLHCIQTLPDDRPSMTDVVVMLEGSVDGLQIPPKPKLLEPPAIEQPQPSSSSSNWISNDSLIF 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27533350 27535697 + CrPI670011_01g014300.1 Cre01g1430 488975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1430 624 Gene3D Transferase(Phosphotransferase) domain 1 381 591 - -
Cre01g1430 624 MobiDBLite consensus disorder prediction 592 624 - -
Cre01g1430 624 SUPERFAMILY Protein kinase-like (PK-like) 281 583 IPR011009 -
Cre01g1430 624 MobiDBLite consensus disorder prediction 605 624 - -
Cre01g1430 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 199 602 IPR045874 GO:0004672(InterPro)
Cre01g1430 624 Pfam Wall-associated receptor kinase C-terminal 153 240 IPR032872 -
Cre01g1430 624 FunFam PR5-like receptor kinase 381 595 - -
Cre01g1430 624 Pfam Protein tyrosine and serine/threonine kinase 308 581 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1430 624 SMART serkin_6 306 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1430 624 Pfam Wall-associated receptor kinase galacturonan-binding 34 93 IPR025287 GO:0030247(InterPro)
Cre01g1430 624 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Cre01g1430 624 ProSiteProfiles Protein kinase domain profile. 306 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1430 624 Gene3D Phosphorylase Kinase; domain 1 278 380 - -
Cre01g1430 624 FunFam serine/threonine-protein kinase PBS1-like 274 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1430 Cre-Chr1:27533350 Cre01g1434 Cre-Chr1:27546065 3.00E-185 dispersed
Cre01g1429 Cre-Chr1:27526495 Cre01g1430 Cre-Chr1:27533350 2.00E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63831 PF07714 PK_Tyr_Ser-Thr 2.30E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1430 - - - 0.0