Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1432 AAGTCAAATTTACTCAAGAAAATATTTATCATAGTTGCAATTGCTTCAGGAAGCATCATTTTAACAATCTCCATCATCATCTTCATATACTCCACAAGGAAACACATCTCAGACGACAAGAAAATTGAGGAAATGATAAGGAGATATTCCACGCACACACCAAAGCGGTATAGTTACTCACAGCTAAAGAAAATCACAAATTCCTTCACAAACAAGCTTGGCCAAGGAGGATTTAGCACCGTCTACAAAGGAAAATTACGAGATGGTTGCGAGGTGGCAGTGAAACTCTTGAATGAATCAAAAGAAAACGGCGAAGAGTTTATGAATGAAGTTGTTAGCATCACCAAAACATCGCATGTAAACATAGCCACCCTCTTGGGATTTTGCTATGAACGAAGTACAAGGGCTTTAGTTTATGAATACATGTCTAATGGGTCATTGGACAAGTATATATTTCAAAGAGGGCTACAGATCAAAAATGGTGTGGAGTTGAGTTTGAGCACACTCTATGGCATTGTTATTGGTGTGGGTCGAGGCTTAGAGTATTTGCATTGCCACTGCAACACAAAGATCTTGCATTTTGACATCAAACCAGACAACATTCTTTTGGACAATAATTTCTGCCCCAAGATCTCAGACTTTGGACTTGCAAAGCAATGCATGGCCAGAGAGAGTCATGTGTCAATGACAGGTATGAAAGGAACGGTAGGATTCATGGCACCTGAAGTAATATTTAGAAATCTTGGCAAAGTTTCCCACAAGTCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGTTGGGTGAAAAGAAGTGTCCCAATGAAAGAGTGGGGCAGAGCAATGAAGGGTACTTTCCTGATTGGATATATAACAATCTTACACGACATGAAATAGATGAAGGTTCTAATTGCTGGGGCAACACAGAAGAGGAAAAACAAATGGCAAGAAAAATGATAATTGTGGGGTTGCATTGCATTCAGACTTCGCCCCATCACAGGCCGTCGATGACCCATGTGGTTGCAATGTTAGAAGGCAGTATTGATGGCTTACAAATTCCACCAAAACCCAACTTGTATGGACCTCCTGCGACTGATCTACTCCAAGCTACTGCTTCTTCTTCTTCATCCAATTCGTACTAA 1143 40.16 KSNLLKKIFIIVAIASGSIILTISIIIFIYSTRKHISDDKKIEEMIRRYSTHTPKRYSYSQLKKITNSFTNKLGQGGFSTVYKGKLRDGCEVAVKLLNESKENGEEFMNEVVSITKTSHVNIATLLGFCYERSTRALVYEYMSNGSLDKYIFQRGLQIKNGVELSLSTLYGIVIGVGRGLEYLHCHCNTKILHFDIKPDNILLDNNFCPKISDFGLAKQCMARESHVSMTGMKGTVGFMAPEVIFRNLGKVSHKSDVYSYGMLVLEMLGEKKCPNERVGQSNEGYFPDWIYNNLTRHEIDEGSNCWGNTEEEKQMARKMIIVGLHCIQTSPHHRPSMTHVVAMLEGSIDGLQIPPKPNLYGPPATDLLQATASSSSSNSY 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27541351 27542655 + CrPI670011_01g014320.1 Cre01g1432 488977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1432 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1432 380 PIRSF ILK 22 352 - -
Cre01g1432 380 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524(InterPro)
Cre01g1432 380 SMART serkin_6 67 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1432 380 ProSiteProfiles Protein kinase domain profile. 67 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1432 380 Pfam Protein tyrosine and serine/threonine kinase 69 343 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1432 380 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 363 IPR045874 GO:0004672(InterPro)
Cre01g1432 380 SUPERFAMILY Protein kinase-like (PK-like) 45 345 IPR011009 -
Cre01g1432 380 FunFam serine/threonine-protein kinase PBS1-like 35 141 - -
Cre01g1432 380 Gene3D Transferase(Phosphotransferase) domain 1 142 350 - -
Cre01g1432 380 Gene3D Phosphorylase Kinase; domain 1 39 141 - -
Cre01g1432 380 FunFam PR5-like receptor kinase 142 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1432 Cre-Chr1:27541351 Cre05g1915 Cre-Chr5:31315835 2.90E-66 dispersed
Cre01g1432 Cre-Chr1:27541351 Cre01g1434 Cre-Chr1:27546065 2.50E-150 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63832 PF07714 PK_Tyr_Ser-Thr 7.40E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1432 - - - 0.0