Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1434 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCTTTCTTCTTCACAATCCTGTTGTTTGATCTTCAGCTCTGTTTCGGCGATGTCGCCAGCGAGGAATTTAAAGCTTGCGGCGTCAATTACAACTGCGGAGATTTGGTTAACATCTCATATCCGTTCTGGGGGAATAAGCGACAGGAGTTTTGTGGTCGGCGAGAATTTGGACTGAATTGCAAAGACAACAAAACCACCACGATTCAAATCAATTCCATGGAGTATAACGTTGTGAACATCAGCCAATTGGATCATAGAATGAGGATCGCAAGATCAGACCTGTTCGATGATTACTGCCCTAACAATCAAAGCGAAGCGGCGACGTTGAATTATAATCTGTTCCAGTATTCTTCGAATGATTCGAATCTGTGGGTGTGGTACGATTGCCCGCCGCAACAGGGAATTCCGGAGGAGTTCATGTTTTCGTGCGGTTGGAAGGGGGAAAGAAATTGGGGAGTGAATTATGCTTTGGAAAACAACAAGGAAGAGATGCAATGGAGTTCATATATGAGAGATTGCAGAATGAAAATGGAAGTGACAGTTACAATAGATGTATTAAAAGGAGGAGAAAAGAACAGAACGATGGTGGTGGAAAGGGCAATGAAAGAAGGGTTTGAAGTGGAATACGGGGATTTGTATACGGTGGCGTGCGAGGGATGCAAGGAATACGGCGGCACGTGTGGTGCAAACGCGACTCAAGAGTTTTACTGCATTTGTGGAACTGATATAAATCCTTACGCTTGCAAACCTCCTTCTCCTCCATCTGGAGCACGATATGCAAATGTTAGATGGAAGATGGTCATTATAGGAGCAATACCTTCGGCCGGCTTCATTTTAATAATCTCCATTATCATCTTCATCTACTTCAAAAGAAAAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAGTTAAAGAAGATCACAGATTCCTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTTACCCTCTTAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATACATGCCTAAAGGGTCATTAGATAAGTACATATCCCACAATAGACTGCAAGAAAATGATATGAAGTTGGATTGGAACATGCTCTACAATGTTGTTATCGGCGTGGCACGAGGTTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAGCCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAAGGCGAAAGAAAGTCATGTGTCGATGACAGGCGTAAAAGGGACGGTAGGATTTATTGCACCCGAAGTAATATTTAGGAACTTTGGTAAGGTTTCTCACAAGTCCGATGTATATAGCTATGGAATGTTGGTTCTTGAAATCGTGGGAGCAAGAAAAAATCCCAATTCCAATGATAATGATGGAGTAGAGCAGCGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTCACACAAAGTGAAATAGATGGAGGTTGTTGGTGGGGAAACACAGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAACTGTGGGGCTGCATTGTATTCAAACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGCAATGTTGGAAAGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTACGACTGATCTCCTCCAAGCTGCTGCTGCTGCTTCTTCTTCATCAAACTCATACTAA 1959 42.47 MKTSVPLFLFSFFFTILLFDLQLCFGDVASEEFKACGVNYNCGDLVNISYPFWGNKRQEFCGRREFGLNCKDNKTTTIQINSMEYNVVNISQLDHRMRIARSDLFDDYCPNNQSEAATLNYNLFQYSSNDSNLWVWYDCPPQQGIPEEFMFSCGWKGERNWGVNYALENNKEEMQWSSYMRDCRMKMEVTVTIDVLKGGEKNRTMVVERAMKEGFEVEYGDLYTVACEGCKEYGGTCGANATQEFYCICGTDINPYACKPPSPPSGARYANVRWKMVIIGAIPSAGFILIISIIIFIYFKRKRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNMLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCKAKESHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEIVGARKNPNSNDNDGVEQRSEEYFPDWIYNNLTQSEIDGGCWWGNTEEEEEMARKMITVGLHCIQTLPDDRPSMTDVVAMLESSVDGLQIPPKPNLFGPPTTDLLQAAAAASSSSNSY 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27546065 27550263 + CrPI670011_01g014340.1 Cre01g1434 488979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1434 652 SMART serkin_6 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1434 652 Gene3D Transferase(Phosphotransferase) domain 1 411 623 - -
Cre01g1434 652 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Cre01g1434 652 Pfam Protein tyrosine and serine/threonine kinase 337 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1434 652 CDD STKc_IRAK 341 616 - -
Cre01g1434 652 SUPERFAMILY Protein kinase-like (PK-like) 323 635 IPR011009 -
Cre01g1434 652 FunFam S-receptor-like serine/threonine-protein kinase 303 410 - -
Cre01g1434 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1434 652 FunFam PR5-like receptor kinase 411 627 - -
Cre01g1434 652 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
Cre01g1434 652 Gene3D Phosphorylase Kinase; domain 1 307 410 - -
Cre01g1434 652 ProSiteProfiles Protein kinase domain profile. 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1434 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 215 632 IPR045874 GO:0004672(InterPro)
Cre01g1434 652 Pfam Wall-associated receptor kinase C-terminal 167 250 IPR032872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1429 Cre-Chr1:27526495 Cre01g1434 Cre-Chr1:27546065 0.00E+00 dispersed
Cre01g1430 Cre-Chr1:27533350 Cre01g1434 Cre-Chr1:27546065 3.00E-185 dispersed
Cre01g1434 Cre-Chr1:27546065 Cre09g1865 Cre-Chr9:37191155 1.00E-63 dispersed
Cre01g1432 Cre-Chr1:27541351 Cre01g1434 Cre-Chr1:27546065 2.50E-150 proximal
Cre01g1434 Cre-Chr1:27546065 Cre01g1435 Cre-Chr1:27551123 1.60E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63833 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1434 - - - 0.0