Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1435 ATGAAAATCTACCTAAAACCCAGAAAAAGTACCTTCTTCTTCTTCTTCATCGCGTTTCATCTTTCGCCATGTTTCAGCGAAGAACCTCTCCGTGAATTCAAAGATTGCGGTGTGAGTTATAATTGCGGCGAATTGGTAAACATCACGTATCCTTTTTGGGGGAATAAGAGGCAGAGTTTTTGCGGAAGGAAAGAATTCAAACTCAACTGCAAAAAGAACCAAATCACCACAATTTCCATAAACTCTCTGGAATACAACGTTCTGAAAATCAACCAAGCGAATAATAGAATGAGGATAGCAAGATCAGACCTGTTCGAGAATTACTGCCCAGACAATGAAATCCAAATGGCGAGTATGGATCAGCATCTGTTCGCGTATGCTTCCAACAATCAGAACATTTCGGTATGGTACAATTGCTCGAGGGAAAAGGAAATTCAAATTCCGGAGATTTACAAATTTGGGTGCGGTAGGAAATGGGCAGAGGTTGGGAGGGCGAATTATGCATTCGAACCGTCGGCGGCGATTTGGAGTCTACAAATGGGGGAATGTGGAATGAAGATAGAAGTGATGATTACGATAGAGTGGTTGAAAGAAGGTATAAAAGAGAGGAAAAGTTTAGTGGAGAAGGCTGTGAAATGGGGTTTCGATGTGGAATACGGGAATTGGTATAAGGAAGCTTGTGATGAATGCAATGAAAACGGAGGCAAATGTGGAGGGAACAATACATATCCATATTACTGCATTTGTAAGAACGGAGTTGCTAATTCTTACGACTGTAAAGCTGCTCTTCCTCGTCATCCTCCTCCTGCCCCTAATATCAGATCAAATGATATTTGGAAGAAGGTTGTCATAGGTGTTGGCTCTGGTTTTGGAGGCATAGTGATTATGAGTCTAATCTTTTTCATTAGGCTTCGTTTGCACAAAAACAAGCATTCTCATGCTCCTTCCTCCATTCTCCTTCAAAACAATAATTCTCGTGATCGTCTAATGAAGGAACTTGAGAAAGGAGAAAATTACATGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACAAGCTACAAACAAATTCAACCCAGCCAACCAACTTGGAGATGGCGGCTTTGGCACCGTCTACTATGGCAAACTACTAGATGGGCGTGAGGTTGCAGTTAAACGATTGTTTGAAAATAACTACAGAAAAGTTGAGCATTTCCTAAATGAAGTCGAGATCCTTACTCGTTTGCACCACCCACATCTTGTCACCCTTTACGGATGCACCTCTCGACGATCTCGTGAACTCTTGTTGGTTTATGAGTTTGTACCGAACGGTACGGTCGCCGATCATCTTCACGGCATCCAAGCAAGACCAGGTGAGCTTCCATGGCTTACAAGGTTGAAGATTGCCATAGAGACAGCAAGTTCTCTGGCTTTTCTCCATGCTTCGAAAACCATCCACCGTGATGTTAAAACCACCAACATTCTCGTTGACAACAACTACGACGTTAAAGTCACTGATTTTGGACTGTCTCGCCTTTTTCCGACGCAAGCTACGCATGTTTCAACTGCTCCACAAGGAACTCCAGGATATGTTGATCCAGAGTATTACGAATGTTATCAACTTACGAATAAAAGCGACGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCGAAGCCAGCAGTTGATATCACAAGGCACAGACATGAGATTAACCTGTCGACGATGGCGATCAACAAGATCCAAAACGACGAATTACACGACTTTGTAGATCCATATCTTGGATTCAAAACAGATGAAAGGATCAGAGACATGATATGTGGAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGACCCTCAATGTTTGAGGCTCTAGAAATTCTGAAGAATATAGAGAGTAGAAGTTGTGGCAAAGAGAAGGCACAATTCCCAGATTCTGCCATTTTGCCTTGA 1956 42.43 MKIYLKPRKSTFFFFFIAFHLSPCFSEEPLREFKDCGVSYNCGELVNITYPFWGNKRQSFCGRKEFKLNCKKNQITTISINSLEYNVLKINQANNRMRIARSDLFENYCPDNEIQMASMDQHLFAYASNNQNISVWYNCSREKEIQIPEIYKFGCGRKWAEVGRANYAFEPSAAIWSLQMGECGMKIEVMITIEWLKEGIKERKSLVEKAVKWGFDVEYGNWYKEACDECNENGGKCGGNNTYPYYCICKNGVANSYDCKAALPRHPPPAPNIRSNDIWKKVVIGVGSGFGGIVIMSLIFFIRLRLHKNKHSHAPSSILLQNNNSRDRLMKELEKGENYMAVPLFSYQELVQATNKFNPANQLGDGGFGTVYYGKLLDGREVAVKRLFENNYRKVEHFLNEVEILTRLHHPHLVTLYGCTSRRSRELLLVYEFVPNGTVADHLHGIQARPGELPWLTRLKIAIETASSLAFLHASKTIHRDVKTTNILVDNNYDVKVTDFGLSRLFPTQATHVSTAPQGTPGYVDPEYYECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNDELHDFVDPYLGFKTDERIRDMICGVAELAFQCLQSVRDTRPSMFEALEILKNIESRSCGKEKAQFPDSAILP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27551123 27554775 + CrPI670011_01g014350.1 Cre01g1435 488980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1435 651 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 638 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cre01g1435 651 Pfam Wall-associated receptor kinase C-terminal 174 251 IPR032872 -
Cre01g1435 651 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Cre01g1435 651 ProSiteProfiles Protein kinase domain profile. 357 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1435 651 Pfam Protein kinase domain 360 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1435 651 SUPERFAMILY Protein kinase-like (PK-like) 336 629 IPR011009 -
Cre01g1435 651 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524(InterPro)
Cre01g1435 651 FunFam Wall-associated receptor kinase-like 20 434 642 - -
Cre01g1435 651 SMART serkin_6 357 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1435 651 Gene3D Phosphorylase Kinase; domain 1 328 433 - -
Cre01g1435 651 Gene3D Transferase(Phosphotransferase) domain 1 434 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1428 Cre-Chr1:27518041 Cre01g1435 Cre-Chr1:27551123 9.40E-254 dispersed
Cre01g1431 Cre-Chr1:27537841 Cre01g1435 Cre-Chr1:27551123 7.10E-29 dispersed
Cre01g1435 Cre-Chr1:27551123 Cre06g2335 Cre-Chr6:31278230 4.70E-149 dispersed
Cre07g1837 Cre-Chr7:33748702 Cre01g1435 Cre-Chr1:27551123 9.90E-25 dispersed
Cre01g1433 Cre-Chr1:27544699 Cre01g1435 Cre-Chr1:27551123 2.00E-15 proximal
Cre01g1434 Cre-Chr1:27546065 Cre01g1435 Cre-Chr1:27551123 1.60E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63834 PF00069 Pkinase 5.50E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1435 - - - 0.0