Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1447 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATGTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATCACCTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACATTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGATGCTGATGACAAATTGAAGGCAAAGGAAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 822 39.42 MAEFTPNFQSLKPSCFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNHLHGSNKRKLENDAYESSSANSTPQISENGIKTKNNIGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSDADDKLKAKEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNTI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27718479 27720096 + CrPI670011_01g014470.1 Cre01g1447 488992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1447 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 222 IPR036638 GO:0046983(InterPro)
Cre01g1447 273 CDD bHLH_AtBPE_like 146 231 - -
Cre01g1447 273 Gene3D - 153 225 IPR036638 GO:0046983(InterPro)
Cre01g1447 273 FunFam transcription factor BEE 3-like 153 224 - -
Cre01g1447 273 SMART finulus 162 212 IPR011598 GO:0046983(InterPro)
Cre01g1447 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 100 230 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre01g1447 273 MobiDBLite consensus disorder prediction 101 163 - -
Cre01g1447 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983(InterPro)
Cre01g1447 273 MobiDBLite consensus disorder prediction 130 163 - -
Cre01g1447 273 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983(InterPro)
Cre01g1447 273 MobiDBLite consensus disorder prediction 105 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1447 Cre-Chr1:27718479 Cre08g0462 Cre-Chr8:15932451 1.20E-37 dispersed
Cre01g1447 Cre-Chr1:27718479 Cre06g2342 Cre-Chr6:31363236 3.50E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53034 PF00010 HLH 5.30E-05 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1447 - - - 0.0