Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1476 ATGAAGACGGTCATGGACTCCTCCTCCTCCCGAAGACACTTCCACTGGACCCAGAAGGTAGGGAGTGAAGAAGAAGAAGATCAATGTCCACTCCCAACTGTCAAACCCTCCTCCGAAGCCGCCGACCTGGAAGAGGTGAAGAAGAAAAACAGAGTCGTCTCTTCAGAGCCGCTGCCGCAGTCACAGCCACCGCATCCCGCAGCCCAACCACAAAGAAGGAAGATGCCGGCCGTTGCAGTTGCGCGGTTGCGTTCGGTTCTCACGGTTTTTGCCAAAAATCGGTCGACCCTTTCACCGGGTCTGGGTTCTCGGGTCATTGGAACCCTTTTCGGTTCTCGGCGTGGCCATGTTCACTTCGCATTTCAAAGAGACCCCAACTCGGAACCTGCCTTTTTGGTAGAGCTTGCGACGCCTATTAGTGGCTTGGTAAAAGAAATGGCATCTGGGTTGGTCCGAATTGCGTTGGAATGTGATAAAGAGAAAGAAGGGGAAAAGAAAGCAGTGAGACTTCTAGAACAGCCTCTTTGGAGGACATTTTGCAATGGGAAGAAGAGTGGTTTTGCTACAAGGAAAGATTGTGGGGTTAAAGAGATGAAAATTCTCAAGGCCGTGGAGCCAATTTCAATGGGTGCGGGTGTTCTTCCAGGAAACTATGAAGGGGAAACCGAATCGGCTGGAGCTGAGTCGCCTGAATCTGAAGCTTGTTCTGATAATGAAATCATGTACATGAGAGCCAAATTTGAGAGAATTGTGGGTTCTAGAGATTCCGAAGCTTTTTACATGATGAACCCAGATAGCAATGGAACTCCTGAACTCAGCCACTCGCCGCCGCTCCCCCCAGACACCGTCGTCTGCCGTCGGTCAGGCCACCCCGCCGCTCCAGCCACGTCAATTCGCCGGTTGTCGTTCGTGGCCGCCTGCCGTCACGTCCGAGGTCCAGAGAGCCCAATAATTTTATTTAAAAGGTCCGAGTTTGTCGGCCCAAATGTGAACGTCCAACTCGACTCACTTATTGAAGTCGTTCAAGTTCGTGGTATCAACTTCTTCAATTTCATTACTGTTATTAGAAATTCTTACGAGAATCATCACTTGGAAGTCAGTGCCATGGTCGTACTGGATGAGAAAGTTCCTTCCTCATCAGAGGTAGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACGGGTGCGGAAGAATCGGAACTTCAAAATCCAATGAAAGGTGAAGAAGAAGGGGAAGGAGATGCTGAAGGCAATGTATCAGTGAAGAAAGTGGAAAAAGACGAGAAGATGAAGAAGAAGAGGAAGACGAAAATGAAGAGGAAGAACGAGTTGGAGGAGGAAGGACATGAAAATGCTAATGATGACGAGGGCGAGGATGGCGTGGAAGGGAAGGTTGAGGAGGATGAGGAGAAAGAGAACGAGGAAAAGAAGTTTAAGACTGTTGGATCAGGAATTATGAGTACTGTTTCATTTGATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAGTTGGGAAAGATATCCTTGGAGCTGCAAGGACAGGATCCGGGAAAACTCTTGCCTTTCTTATACCAGCTGTGGAGCTCCTACATCACATCTGCTTTACTCCTCGTAATGGAACTGGTGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTTAATCTACTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAGCATACCAAGAATTTTGTGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAAGCTTCTACCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTTGAAGATCTTGTTCGCTTGTCGTTTCAGTCAACTCCTATTTATATTGACGTGGATGATGGAAGAACAAAGGTCACCAACGAGGGGTTGCAACAAGGTTACTGTGTTGTGCCTAGTTCAAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTGTCTAAGAAAGTAATGGTCTTCTTCTCGTCCTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCGAGACTGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGACATTCCCGCCGTTGATTGGATTGTGCAGTACGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTTGGCCGAACAGCTCGAGGCGAAGGTAGCAGAGGAAATGCCCTACTTTTCTTGATGCCTGAAGAGCTTCAATTTCTTCACTATCTAAAGGCAGCAAAAGTTCCCGTCAAAGAGTATGAGTTCAGTGATAAGAAACTGGCCAATGTGCAATCTCATCTGGAGAAACTGGTGGGCAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTACAGATCCTATATATTAGCTTACAATTCACATTCTATGAAAGATATTTTCAATGTCCACCGCCTTGATCTCCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATTGACAGCAGTGCTTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGGAGCAGCAACAGATTCATTAAGAGCAATCCTTATGGGAGGAAGAATGAGGGAGATGAGAGACAGTTTGTAAGATACTAG 2952 45.63 MKTVMDSSSSRRHFHWTQKVGSEEEEDQCPLPTVKPSSEAADLEEVKKKNRVVSSEPLPQSQPPHPAAQPQRRKMPAVAVARLRSVLTVFAKNRSTLSPGLGSRVIGTLFGSRRGHVHFAFQRDPNSEPAFLVELATPISGLVKEMASGLVRIALECDKEKEGEKKAVRLLEQPLWRTFCNGKKSGFATRKDCGVKEMKILKAVEPISMGAGVLPGNYEGETESAGAESPESEACSDNEIMYMRAKFERIVGSRDSEAFYMMNPDSNGTPELSHSPPLPPDTVVCRRSGHPAAPATSIRRLSFVAACRHVRGPESPIILFKRSEFVGPNVNVQLDSLIEVVQVRGINFFNFITVIRNSYENHHLEVSAMVVLDEKVPSSSEVEAMNKRRKRKRPKKNLPSTGAEESELQNPMKGEEEGEGDAEGNVSVKKVEKDEKMKKKRKTKMKRKNELEEEGHENANDDEGEDGVEGKVEEDEEKENEEKKFKTVGSGIMSTVSFDSLDLSEKTLRAIKDMGFEHMTQIQARAIPPSLVGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSRGNALLFLMPEELQFLHYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSSNRFIKSNPYGRKNEGDERQFVRY 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27975393 27987179 - CrPI670011_01g014760.1 Cre01g1476 489021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1476 983 SMART helicmild6 756 837 IPR001650 -
Cre01g1476 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 852 IPR027417 -
Cre01g1476 983 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Cre01g1476 983 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 716 886 IPR001650 -
Cre01g1476 983 MobiDBLite consensus disorder prediction 958 983 - -
Cre01g1476 983 CDD DEADc_DDX18 507 704 IPR044773 GO:0003724(InterPro)|GO:0005524(InterPro)
Cre01g1476 983 MobiDBLite consensus disorder prediction 969 983 - -
Cre01g1476 983 SMART DUF4217_3 877 940 IPR025313 -
Cre01g1476 983 Pfam Protein of unknown function, DUF617 105 273 IPR006460 GO:0010274(InterPro)
Cre01g1476 983 Coils Coil 434 454 - -
Cre01g1476 983 MobiDBLite consensus disorder prediction 1 74 - -
Cre01g1476 983 Gene3D - 426 706 IPR027417 -
Cre01g1476 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 703 IPR027417 -
Cre01g1476 983 MobiDBLite consensus disorder prediction 409 434 - -
Cre01g1476 983 SMART ultradead3 515 720 IPR014001 -
Cre01g1476 983 MobiDBLite consensus disorder prediction 1 30 - -
Cre01g1476 983 Pfam DEAD/DEAH box helicase 520 691 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre01g1476 983 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 496 524 IPR014014 GO:0003724(InterPro)
Cre01g1476 983 CDD SF2_C_DEAD 717 847 - -
Cre01g1476 983 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 527 702 IPR014001 -
Cre01g1476 983 FunFam RNA helicase 713 943 - -
Cre01g1476 983 MobiDBLite consensus disorder prediction 377 485 - -
Cre01g1476 983 Gene3D - 713 957 IPR027417 -
Cre01g1476 983 PANTHER RNA HELICASE 487 883 - GO:0000463(PANTHER)|GO:0005730(PANTHER)
Cre01g1476 983 MobiDBLite consensus disorder prediction 456 476 - -
Cre01g1476 983 Pfam Domain of unknown function (DUF4217) 889 938 IPR025313 -
Cre01g1476 983 NCBIfam uncharacterized plant-specific domain TIGR01570 105 273 IPR006460 GO:0010274(InterPro)
Cre01g1476 983 Pfam Helicase conserved C-terminal domain 732 835 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1476 K13179 - - csv:101209673 1009.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1476 Cre-Chr1:27975393 Cre09g0920 Cre-Chr9:9273265 2.20E-65 dispersed
Cre01g1384 Cre-Chr1:27071739 Cre01g1476 Cre-Chr1:27975393 1.40E-283 transposed
Cre02g2177 Cre-Chr2:35412094 Cre01g1476 Cre-Chr1:27975393 9.40E-57 transposed
Cre05g0848 Cre-Chr5:7620122 Cre01g1476 Cre-Chr1:27975393 1.70E-34 transposed
Cre05g1405 Cre-Chr5:16662741 Cre01g1476 Cre-Chr1:27975393 6.20E-43 transposed
Cre05g2668 Cre-Chr5:37665748 Cre01g1476 Cre-Chr1:27975393 1.50E-18 transposed
Cre06g1509 Cre-Chr6:9727177 Cre01g1476 Cre-Chr1:27975393 2.90E-32 transposed
Cre06g1557 Cre-Chr6:10751758 Cre01g1476 Cre-Chr1:27975393 7.10E-16 transposed
Cre06g2594 Cre-Chr6:33650322 Cre01g1476 Cre-Chr1:27975393 2.00E-45 transposed
Cre07g0848 Cre-Chr7:7020029 Cre01g1476 Cre-Chr1:27975393 1.30E-72 transposed
Cre09g0971 Cre-Chr9:9993812 Cre01g1476 Cre-Chr1:27975393 1.50E-43 transposed
Cre09g1005 Cre-Chr9:10291553 Cre01g1476 Cre-Chr1:27975393 7.00E-54 transposed
Cre09g2437 Cre-Chr9:43748222 Cre01g1476 Cre-Chr1:27975393 6.30E-60 transposed
Cre10g0758 Cre-Chr10:7395598 Cre01g1476 Cre-Chr1:27975393 2.80E-89 transposed
Cre10g1035 Cre-Chr10:20260508 Cre01g1476 Cre-Chr1:27975393 2.00E-53 transposed
Cre11g0628 Cre-Chr11:3447213 Cre01g1476 Cre-Chr1:27975393 3.30E-70 transposed
Cre11g2298 Cre-Chr11:34601786 Cre01g1476 Cre-Chr1:27975393 5.20E-50 transposed
Cre01g1476 Cre-Chr1:27975393 Cre05g2487 Cre-Chr5:36253705 1.80E-59 wgd
Cre01g1476 Cre-Chr1:27975393 Cre06g2377 Cre-Chr6:31694618 5.70E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g380 . Blo16g00146 Bda06g00497 . . Bpe13g00335 Bma06g00007 Bma12g00946 Cmo13g01089 . Cma10g00259 . Car10g00244 . Sed08g0327 Cpe20g00100 . Bhi02g00016 Tan09g1959 Cmetu02g0820 . Hepe09g0317 . . Cla06g01496 Cam06g1650 Cec06g1710 Cco06g1708 Clacu06g1616 Cmu06g1565 Cre06g2377 . . Cone13ag0007 Cone19ag0006 Lsi02g00156 Csa01g00640 Chy12g01462 Cme12g01902 . Blo15g00356 Bda11g01789 . Bpe07g00738 Bpe15g00552 Bma03g00880 . Sed14g0142 Cmo10g00277 . Cma13g01048 . Car13g00881 . . Cpe18g00736 Bhi08g01038 Tan05g2301 Cmetu08g1010 Lac10g0205 Hepe07g2422 . . Cla04g01118 Cam04g1171 Cec01g1682 Cco01g1730 Clacu04g1199 Cmu04g1178 Cre01g1476 Lsi06g01360 Csa01g00352 Chy02g02391 Cme02g01776
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51