Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1494 ATGGCGACAAAATCCGAGAAATTTTCTGCGGATTTTGTGATGGGTGGAGTGGCTGCGATTGTAGCCAAAACTGCAGCGGCCCCCATTGAGAGAGTCAAGCTTTTGTTGCAGAATCAGGGAGAGATGATAAAGAGAGGGCATCTTAAGAAGCCATATCTGGGCATTCATCACTGTTTCAGAACAGTTTTGAGAGAAGAAGGTCTTTTCTCGCTATGGAGGGGAAATCAGGCTAATGTTATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCGTTCAAAGGTTATTTCAAAACGAAATTTGGGCGCTCGAAAGAGAAGGATGGATACATCAAGTGGTTTGCTGGAAATGTTGCTTCAGGAAGTGCTGCAGGAGCAACTACGTCTTTGTTTCTGTATCATTTGGATTATGCACGAACTCGACTTGGCACCGATGCCAAGGATGTTGGCAGTAACAGTCAGCGCCAGTTTAAAGGGATATTGGATGTCTACAGAAGAACATTGTCGAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGTGTTTCGATCGTGGGAATTACTCTGTACAGGGGCATGTATTTTGGGATTTACGACACTTTGAAGCCTCTTGTTCTGGTTGGACAGTATGAGGGGAACTTTTTTGCTAGTTTCTTATTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCCGGACAAACCCTGAAGTACCGTAGCGGTTTGCACGCCTTTTCTGAGATCATTCGCCATGAGGGCATATCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCAGGGGCTGGCGTTCTTGCAGGTTATGATCAGTTGCACGAAATCGCATGTAGGCATGGTTATTCCTTTGGAGGGCAGCATCAAATAGCCTCAAAATGA 945 44.97 MATKSEKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGHLKKPYLGIHHCFRTVLREEGLFSLWRGNQANVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKDVGSNSQRQFKGILDVYRRTLSSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGQYEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYRSGLHAFSEIIRHEGISALFRGVTANMLVGVAGAGVLAGYDQLHEIACRHGYSFGGQHQIASK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28179126 28180916 + CrPI670011_01g014940.1 Cre01g1494 489039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1494 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 203 IPR018108 -
Cre01g1494 314 Gene3D Mitochondrial carrier domain 2 303 IPR023395 -
Cre01g1494 314 PRINTS Mitochondrial carrier protein signature 24 38 IPR002067 GO:0055085(InterPro)
Cre01g1494 314 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Cre01g1494 314 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085(InterPro)
Cre01g1494 314 PRINTS Mitochondrial carrier protein signature 11 24 IPR002067 GO:0055085(InterPro)
Cre01g1494 314 PRINTS Mitochondrial carrier protein signature 176 194 IPR002067 GO:0055085(InterPro)
Cre01g1494 314 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085(InterPro)
Cre01g1494 314 SUPERFAMILY Mitochondrial carrier 6 294 IPR023395 -
Cre01g1494 314 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 6 305 IPR002113 GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre01g1494 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 99 IPR018108 -
Cre01g1494 314 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Cre01g1494 314 Pfam Mitochondrial carrier protein 212 298 IPR018108 -
Cre01g1494 314 Pfam Mitochondrial carrier protein 6 102 IPR018108 -
Cre01g1494 314 PRINTS Adenine nucleotide translocator signature 111 124 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre01g1494 314 PRINTS Adenine nucleotide translocator signature 52 73 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre01g1494 314 PRINTS Adenine nucleotide translocator signature 8 20 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre01g1494 314 PRINTS Adenine nucleotide translocator signature 85 97 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre01g1494 314 PRINTS Adenine nucleotide translocator signature 216 232 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre01g1494 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 297 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1494 Cre-Chr1:28179126 Cre08g1549 Cre-Chr8:28145524 1.90E-108 dispersed
Cre01g1494 Cre-Chr1:28179126 Cre08g1650 Cre-Chr8:28994345 4.90E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1494 K05863 - csv:101207715 565.459