Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1496 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAATAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTACTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAATATGTTAGCTAAGAAGATAAAGGAGAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCACTTCTTTTACCTCAGCCATTTCAATCTCTTAACATGAGTTGTCCATACCCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCGGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTTGGTGATTAA 741 41.16 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYPTHGTGDDDSAANHDRSGALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28185534 28191775 - CrPI670011_01g014960.1 Cre01g1496 489041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1496 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre01g1496 246 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre01g1496 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre01g1496 246 MobiDBLite consensus disorder prediction 181 214 - -
Cre01g1496 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 Coils Coil 122 145 - -
Cre01g1496 246 Coils Coil 151 188 - -
Cre01g1496 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cre01g1496 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre01g1496 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 MobiDBLite consensus disorder prediction 176 232 - -
Cre01g1496 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1496 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1496 Cre-Chr1:28185534 Cre08g0991 Cre-Chr8:23029370 9.60E-71 dispersed
Cre01g1496 Cre-Chr1:28185534 Cre01g1497 Cre-Chr1:28199248 1.20E-41 tandem
Cre04g2176 Cre-Chr4:38903734 Cre01g1496 Cre-Chr1:28185534 7.30E-30 transposed
Cre01g1496 Cre-Chr1:28185534 Cre07g1952 Cre-Chr7:34922361 8.50E-43 wgd
Cre01g1496 Cre-Chr1:28185534 Cre08g0990 Cre-Chr8:23015602 1.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53041 PF01486 K-box 3.40E-30 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1496 K09264 - csv:101207225 416.001