Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1496 | ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAATAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTACTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAATATGTTAGCTAAGAAGATAAAGGAGAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCACTTCTTTTACCTCAGCCATTTCAATCTCTTAACATGAGTTGTCCATACCCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCGGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTTGGTGATTAA | 741 | 41.16 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYPTHGTGDDDSAANHDRSGALLPPWMLRHHLGD | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28185534 | 28191775 | - | CrPI670011_01g014960.1 | Cre01g1496 | 489041 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1496 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 191 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre01g1496 | 246 | Pfam | K-box region | 84 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre01g1496 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre01g1496 | 246 | MobiDBLite | consensus disorder prediction | 181 | 214 | - | - | |
Cre01g1496 | 246 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | Coils | Coil | 122 | 145 | - | - | |
Cre01g1496 | 246 | Coils | Coil | 151 | 188 | - | - | |
Cre01g1496 | 246 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
Cre01g1496 | 246 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cre01g1496 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | MobiDBLite | consensus disorder prediction | 176 | 232 | - | - | |
Cre01g1496 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre01g1496 | 246 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1496 | Cre-Chr1:28185534 | Cre08g0991 | Cre-Chr8:23029370 | 9.60E-71 | dispersed | |
Cre01g1496 | Cre-Chr1:28185534 | Cre01g1497 | Cre-Chr1:28199248 | 1.20E-41 | tandem | |
Cre04g2176 | Cre-Chr4:38903734 | Cre01g1496 | Cre-Chr1:28185534 | 7.30E-30 | transposed | |
Cre01g1496 | Cre-Chr1:28185534 | Cre07g1952 | Cre-Chr7:34922361 | 8.50E-43 | wgd | |
Cre01g1496 | Cre-Chr1:28185534 | Cre08g0990 | Cre-Chr8:23015602 | 1.30E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53041 | PF01486 | K-box | 3.40E-30 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1496 | K09264 | - | csv:101207225 | 416.001 |