Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1497 ATGGGAAGAGGAAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGGAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTTTGTAGTGGTTCTAGCATGGCCAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATACTGGATGCTACTCGTCAAGTAAATGAGAACCATCCACAGAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAAAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACCAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGATCAGCTTGCAGAACTTCAACACAAGGAACACATGCTTGTGGAAGACAATCGAGGTTTAAGGAAAAAGCTTGAAGAAAGCAGTGCACAACTAACGGCGGCGGCCGCCACATGGGGCTGGGAAGGGGCCGCCGGAGGCCACAGCATGGAGTATCCCAGCCGTGTTGCTTCACAATCAGACGCCTTCTTCCACCCCATAATTCAACCCACTCCGACTTTACAAATTGGGTACAATTCTGTTGGGTCAATGGGGTTGAATAATGTTGAACCTCCATCCCAAAATGCCAATAATCCGTATCACCTTGGCTGGATGCTTTAA 762 44.09 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMAKTLEKYRRCSYGILDATRQVNENHPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKEHMLVEDNRGLRKKLEESSAQLTAAAATWGWEGAAGGHSMEYPSRVASQSDAFFHPIIQPTPTLQIGYNSVGSMGLNNVEPPSQNANNPYHLGWML 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28199248 28203157 - CrPI670011_01g014970.1 Cre01g1497 489042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1497 253 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre01g1497 253 Pfam K-box region 88 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre01g1497 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre01g1497 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 FunFam MADS-box transcription factor 1 13 86 - -
Cre01g1497 253 Coils Coil 125 145 - -
Cre01g1497 253 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre01g1497 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1497 Cre-Chr1:28199248 Cre07g1952 Cre-Chr7:34922361 6.90E-72 dispersed
Cre01g1496 Cre-Chr1:28185534 Cre01g1497 Cre-Chr1:28199248 1.20E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53042 PF01486 K-box 3.80E-25 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1497 K09264 - csv:101204197 424.861