Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1498 ATGGAGTCGTGGAACTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAAAACCCATGTAGTTTTGGGGACAACATGCTTCTCTCAAGTGGTGGTCAGCATGTGGAGGATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGTTGATTCTGTCAGTGATGTCTTGAATACTAAAATTGATGGAGGTAGAAACTTGAATCTGGTTTTGCCCACCTTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCTAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATGTCCAGACCGCGTTTTGCCAAGTCTACGGTTGTAGCAAAGATCTCAGCTCCTCCAAAGACTATCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGCAAACGGCTTGCAGGCCATAACGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCATATAATGGTATTGGAGACGGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTGGGAGAAAATGATTGGTGTAAGCGTATAAAAGTTGAGGGCAAAAATGATTATAATTCTATGTCTGCAACTTCACTGGGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTTCTTTTCAAGAAAATGGAACTAGTACAGCACCTACAATAAACATGTTAAGCGAGACAACTTGCCAATATTCACATAATGTGGGAGGTTCCCATATTGATACACATCCTTTGTTCCACCATACTACCTTACCAAGCGAAGACTTTGGGGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATTATGTCTGAGAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTTCGAGTAAATTTGCCTCAGGGATGAGTGAAGCTCAAATGGGTCCCATACCGACGTGTGAAAGTAGTAATCGTACTGTCACCTTTCAGATTCCCGATAGGGTTCTTCATAGATCAGGTTTGGCAAATCCCAAAGCTAATCTCTCCTATGAAGGCACTCCAACTATTGACTTGCTACAACTCTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCGTGCAGGACTCTGCATAG 1638 42.74 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSSGGQHVEDQSFGELEFPQMVGKQLPVDSVSDVLNTKIDGGRNLNLVLPTFHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNVQTAFCQVYGCSKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDGRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSMSATSLGNRHLNVKSPLLPYDFEVQIPSFQENGTSTAPTINMLSETTCQYSHNVGGSHIDTHPLFHHTTLPSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGISSKFASGMSEAQMGPIPTCESSNRTVTFQIPDRVLHRSGLANPKANLSYEGTPTIDLLQLSSQLQRVEHQRHSVQDSA 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28217262 28222254 + CrPI670011_01g014980.1 Cre01g1498 489043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1498 545 Pfam SBP domain 174 247 IPR004333 GO:0003677(InterPro)
Cre01g1498 545 MobiDBLite consensus disorder prediction 144 163 - -
Cre01g1498 545 MobiDBLite consensus disorder prediction 1 22 - -
Cre01g1498 545 Gene3D - 165 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre01g1498 545 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre01g1498 545 MobiDBLite consensus disorder prediction 143 163 - -
Cre01g1498 545 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Cre01g1498 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 119 482 IPR044817 GO:0003677(InterPro)
Cre01g1498 545 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1498 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1498 Cre-Chr1:28217262 Cre06g0977 Cre-Chr6:3247078 1.40E-32 dispersed
Cre10g1335 Cre-Chr10:26874423 Cre01g1498 Cre-Chr1:28217262 5.80E-29 transposed
Cre01g1498 Cre-Chr1:28217262 Cre06g2410 Cre-Chr6:32001575 3.60E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1335 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.5e-239 826.2
Cre10g1335 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.7e-274 940.6
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50570 55.8 1.1e-38 157.9
Cre01g1498 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.2e-41 167.9
Cre06g2410 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.5e-41 167.5
Cre10g1335 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.5e-239 826.2
Cre01g1498 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.2e-41 167.9
Cre06g2410 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.5e-41 167.5
Cre10g1335 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.7e-274 940.6
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50570 55.8 1.1e-38 157.9
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50670 55.8 1.1e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53043 PF03110 SBP 4.50E-31 No_clan Cre TF