Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1498 ATGGAGTCGTGGAACTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAAAACCCATGTAGTTTTGGGGACAACATGCTTCTCTCAAGTGGTGGTCAGCATGTGGAGGATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGTTGATTCTGTCAGTGATGTCTTGAATACTAAAATTGATGGAGGTAGAAACTTGAATCTGGTTTTGCCCACCTTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCTAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATGTCCAGACCGCGTTTTGCCAAGTCTACGGTTGTAGCAAAGATCTCAGCTCCTCCAAAGACTATCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGCAAACGGCTTGCAGGCCATAACGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCATATAATGGTATTGGAGACGGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTGGGAGAAAATGATTGGTGTAAGCGTATAAAAGTTGAGGGCAAAAATGATTATAATTCTATGTCTGCAACTTCACTGGGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTTCTTTTCAAGAAAATGGAACTAGTACAGCACCTACAATAAACATGTTAAGCGAGACAACTTGCCAATATTCACATAATGTGGGAGGTTCCCATATTGATACACATCCTTTGTTCCACCATACTACCTTACCAAGCGAAGACTTTGGGGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATTATGTCTGAGAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTTCGAGTAAATTTGCCTCAGGGATGAGTGAAGCTCAAATGGGTCCCATACCGACGTGTGAAAGTAGTAATCGTACTGTCACCTTTCAGATTCCCGATAGGGTTCTTCATAGATCAGGTTTGGCAAATCCCAAAGCTAATCTCTCCTATGAAGGCACTCCAACTATTGACTTGCTACAACTCTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCGTGCAGGACTCTGCATAG 1638 42.74 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSSGGQHVEDQSFGELEFPQMVGKQLPVDSVSDVLNTKIDGGRNLNLVLPTFHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNVQTAFCQVYGCSKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDGRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSMSATSLGNRHLNVKSPLLPYDFEVQIPSFQENGTSTAPTINMLSETTCQYSHNVGGSHIDTHPLFHHTTLPSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGISSKFASGMSEAQMGPIPTCESSNRTVTFQIPDRVLHRSGLANPKANLSYEGTPTIDLLQLSSQLQRVEHQRHSVQDSA 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28217262 28222254 + CrPI670011_01g014980.1 Cre01g1498 489043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1498 545 Pfam SBP domain 174 247 IPR004333 GO:0003677(InterPro)
Cre01g1498 545 MobiDBLite consensus disorder prediction 144 163 - -
Cre01g1498 545 MobiDBLite consensus disorder prediction 1 22 - -
Cre01g1498 545 Gene3D - 165 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre01g1498 545 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre01g1498 545 MobiDBLite consensus disorder prediction 143 163 - -
Cre01g1498 545 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Cre01g1498 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 119 482 IPR044817 GO:0003677(InterPro)
Cre01g1498 545 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1498 Cre-Chr1:28217262 Cre06g0977 Cre-Chr6:3247078 1.40E-32 dispersed
Cre10g1335 Cre-Chr10:26874423 Cre01g1498 Cre-Chr1:28217262 5.80E-29 transposed
Cre01g1498 Cre-Chr1:28217262 Cre06g2410 Cre-Chr6:32001575 3.60E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53043 PF03110 SBP 4.50E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1498 - - - 0.0