Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1500 | ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCAAAATCAAGTGGGATGTCATGTATTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCGAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCAGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACGTGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCGCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGAAAGAGCGACTTGTATCCTGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGTTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCTATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCATTGTCGCTCATCTTCGCGATCACAACCTCACCCAGGCAAACTTTTCTCTTCAAGCTTTTGGTTATTAAGTATCTGGGTCATCTCATTTCAGATTTTGCTGCATGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTGCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCGTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG | 2685 | 43.2 | MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIKIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKREVIWSMQGAEATDQGDCSTFRETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPRLGYTCGQAKIAPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASETPTCCLAMSSFYNSKITPCKACACGCQERATCILSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTLRWKAASNRPFKMESFIDKSILSLSLIFAITTSPRQTFLFKLLVIKYLGHLISDFAACAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTQPSRATAIDFSSAHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL | 894 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28234470 | 28242510 | + | CrPI670011_01g015000.1 | Cre01g1500 | 489045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1500 | 894 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 637 | 671 | - | - | |
Cre01g1500 | 894 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 727 | 759 | - | - | |
Cre01g1500 | 894 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 637 | 678 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 779 | 812 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | Gene3D | - | 562 | 893 | IPR015943 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | MobiDBLite | consensus disorder prediction | 561 | 581 | - | - | |
Cre01g1500 | 894 | FunFam | Cleavage stimulation factor subunit 50 | 564 | 894 | - | - | |
Cre01g1500 | 894 | SUPERFAMILY | WD40 repeat-like | 573 | 891 | IPR036322 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 581 | 622 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 727 | 768 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 790 | 804 | IPR019775 | - | |
Cre01g1500 | 894 | Pfam | COBRA-like protein | 49 | 212 | IPR006918 | GO:0010215(InterPro)|GO:0016020(InterPro) | |
Cre01g1500 | 894 | Pfam | WD domain, G-beta repeat | 764 | 803 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | Pfam | WD domain, G-beta repeat | 634 | 669 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | Pfam | WD domain, G-beta repeat | 578 | 612 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | Pfam | WD domain, G-beta repeat | 729 | 759 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | PANTHER | PROTEIN COBRA | 13 | 429 | IPR006918 | GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER) | |
Cre01g1500 | 894 | CDD | WD40 | 577 | 891 | - | - | |
Cre01g1500 | 894 | SMART | WD40_4 | 675 | 713 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | SMART | WD40_4 | 630 | 669 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | SMART | WD40_4 | 851 | 891 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | SMART | WD40_4 | 574 | 613 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | SMART | WD40_4 | 716 | 759 | IPR001680 | GO:0005515(InterPro) | |
Cre01g1500 | 894 | SMART | WD40_4 | 762 | 803 | IPR001680 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1500 | Cre-Chr1:28234470 | Cre07g1948 | Cre-Chr7:34888111 | 1.50E-169 | dispersed | |
Cre01g1500 | Cre-Chr1:28234470 | Cre06g2413 | Cre-Chr6:32019750 | 4.20E-164 | wgd | |
Cre01g1500 | Cre-Chr1:28234470 | Cre07g1947 | Cre-Chr7:34884676 | 6.70E-154 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1500 | K14406 | - | csv:101203708 | 828.935 |