Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1500 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCAAAATCAAGTGGGATGTCATGTATTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCGAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCAGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACGTGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCGCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGAAAGAGCGACTTGTATCCTGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGTTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCTATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCATTGTCGCTCATCTTCGCGATCACAACCTCACCCAGGCAAACTTTTCTCTTCAAGCTTTTGGTTATTAAGTATCTGGGTCATCTCATTTCAGATTTTGCTGCATGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTGCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCGTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2685 43.2 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIKIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKREVIWSMQGAEATDQGDCSTFRETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPRLGYTCGQAKIAPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASETPTCCLAMSSFYNSKITPCKACACGCQERATCILSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTLRWKAASNRPFKMESFIDKSILSLSLIFAITTSPRQTFLFKLLVIKYLGHLISDFAACAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTQPSRATAIDFSSAHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28234470 28242510 + CrPI670011_01g015000.1 Cre01g1500 489045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1500 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 637 671 - -
Cre01g1500 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 727 759 - -
Cre01g1500 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 678 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 812 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 Gene3D - 562 893 IPR015943 GO:0005515(InterPro)
Cre01g1500 894 MobiDBLite consensus disorder prediction 561 581 - -
Cre01g1500 894 FunFam Cleavage stimulation factor subunit 50 564 894 - -
Cre01g1500 894 SUPERFAMILY WD40 repeat-like 573 891 IPR036322 GO:0005515(InterPro)
Cre01g1500 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 727 768 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 ProSitePatterns Trp-Asp (WD) repeats signature. 790 804 IPR019775 -
Cre01g1500 894 Pfam COBRA-like protein 49 212 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cre01g1500 894 Pfam WD domain, G-beta repeat 764 803 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 Pfam WD domain, G-beta repeat 634 669 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 Pfam WD domain, G-beta repeat 578 612 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 Pfam WD domain, G-beta repeat 729 759 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 PANTHER PROTEIN COBRA 13 429 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cre01g1500 894 CDD WD40 577 891 - -
Cre01g1500 894 SMART WD40_4 675 713 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 SMART WD40_4 630 669 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 SMART WD40_4 851 891 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 SMART WD40_4 574 613 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 SMART WD40_4 716 759 IPR001680 GO:0005515(InterPro)
Cre01g1500 894 SMART WD40_4 762 803 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1500 Cre-Chr1:28234470 Cre07g1948 Cre-Chr7:34888111 1.50E-169 dispersed
Cre01g1500 Cre-Chr1:28234470 Cre06g2413 Cre-Chr6:32019750 4.20E-164 wgd
Cre01g1500 Cre-Chr1:28234470 Cre07g1947 Cre-Chr7:34884676 6.70E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1500 K14406 - csv:101203708 828.935