Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1501 TTAAGGGATTGGAGGATTTTAGCACGCTACCAGCGAATTAAGCTTTTTCGGCAGAAATCAGTGGGTAGTGCCATGGAAGAAGAGATCGGAGAAGAATTCAAGAGGAGTGGTTTCACGTTCGATGAAGAGGAAGTGATTCTCCAAAAATGTGTTACGTTCTGTGTTAATTACAATCTAAAGCCTTCAGATATTGTTTCTAGCTGGGAGGTCTACTATCTCAACAGGCAATTAGATGGGTCATTGGTGCAAATTGAACAGATGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAGCAGTCATTAAAGGGGAACCAGATCTTCATGTTTACTCGAGCAAAGATGTGGAAGCGATTTTGAATGATGAGGATGAAGATCTAAATGGAGACATTCTTAAGACTCCAAATGGGAAATCTCAGAGCCTCCACAAAGAGCGATTGGGTTTGACACCTTACACGAATGAAGGCTTGTTCTCCTCGGGAAAGCCTTCAAAGCATGTTACACCCTTTGGCCAAAGAACAGAGAAGTTTGTTGTGAGGCTCAACATTAATAGCATGCCTGATAAGGTGACGGCTGAAAAGGAAGATAATTGCGAGAATGATGAAGATGCAATCATCAAGAAGGTTCGACCCCTGCAAGGATGCTTATTGACAATCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAAGGATGAAGATAGGTTTAACGCTCTTGATAACCGAATCATGAGGCATGCTAAAGCTCTTGCTGCATCTGGGCTCTACGAAGAAGCAGTGGACCCTACAGTTGCTTCACAGAAAAACATGTTTGCAGTGGGCATGATTTATTGTGATGGTGAAGGACACTTGAACGATAAGTCCACCTTGTTGCAAAGCAGTATCACGCATTCAGGGGGGCAGCGAGTTCGTCTAGAATTACAACACTTAAGCCAATTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCGTCCAAACTTGTAGATTCTTTTCCTCTGTCTGCCACTATAGACCCCATTCTGCCTCCAGCAAAGAAGATAGCTTTGAACCATGATATCCAACCAATTAATCAATCCTCTACACCGTCAGAATTATCGATGATCATTGCATCCGGCCCCTATACAACAACGGACAACTTATTGTTTGAGCCTTTGAATGAGTTATTAGCATATGCAAAAAGAAAAGTTCCCCAGCTACTAATATTGCTTGGACCATTTGTTGATTCTGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTTTAAGAAGGGTACAAGATTATGCAGAACACATGGGTCCTGATGCACGTGTACTGTTGATGCCATCTACAAGGGATGCTCATCACGACTTTGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTCAGACTTCAGATATCCAGTCTCCCAAACCCATGCATTTTGGAAGCAAATCAGGCAACGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGAGAAGAGCTGTCAAGAAACCTAACTAAGGGAGCAACCAACGACCGCCTGAGCACACTTGCAAGTCATATACTTCGCCAGGGCAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTAGACTTTTCACTTGCCCCAAAAGCTCTTGACATTGCTGTAAGACCCGATATTCTCATTCTTCCATCCGACATGAAACACTTCGTGAAGGTCATATCCCTTGGTGAAGGAGGTTCAGAGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGTGAAGGAGGAGTTTCAACATGGCGCTTAAGTTCCAGCAAGAAAGGCGGAGGTGAAATGCACGAGGGCGGAGCAAGAACCTTGAGGGACGACATTTTTATAAAGTTAGCCCTTAATCAATCCAGGATTGGATGA 1995 43.46 LRDWRILARYQRIKLFRQKSVGSAMEEEIGEEFKRSGFTFDEEEVILQKCVTFCVNYNLKPSDIVSSWEVYYLNRQLDGSLVQIEQMDGFLQHLQNEQKEAVIKGEPDLHVYSSKDVEAILNDEDEDLNGDILKTPNGKSQSLHKERLGLTPYTNEGLFSSGKPSKHVTPFGQRTEKFVVRLNINSMPDKVTAEKEDNCENDEDAIIKKVRPLQGCLLTIHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASGLYEEAVDPTVASQKNMFAVGMIYCDGEGHLNDKSTLLQSSITHSGGQRVRLELQHLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLNELLAYAKRKVPQLLILLGPFVDSEHSDIKRGTVEMSFEEIFNFEVLRRVQDYAEHMGPDARVLLMPSTRDAHHDFVFPQPAFDIPSDLRLQISSLPNPCILEANQATIACCTMDILRHLSGEELSRNLTKGATNDRLSTLASHILRQGSFYPLYPPAEGVPLDFSLAPKALDIAVRPDILILPSDMKHFVKVISLGEGGSEEEQARCICVNPGRLAKGEGGVSTWRLSSSKKGGGEMHEGGARTLRDDIFIKLALNQSRIG 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28242536 28250344 - CrPI670011_01g015010.1 Cre01g1501 489046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1501 664 FunFam DNA polymerase alpha subunit B 365 529 - -
Cre01g1501 664 Pfam DNA polymerase alpha subunit B, OB domain 245 345 IPR054300 -
Cre01g1501 664 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 26 634 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Cre01g1501 664 Gene3D - 537 652 - -
Cre01g1501 664 Gene3D - 363 535 - -
Cre01g1501 664 Gene3D - 23 101 IPR043034 -
Cre01g1501 664 Pfam DNA polymerase alpha subunit B N-terminal 27 76 IPR013627 -
Cre01g1501 664 PIRSF DNA_pol_alpha_2 23 657 IPR016722 -
Cre01g1501 664 FunFam DNA polymerase alpha subunit B 24 98 - -
Cre01g1501 664 Pfam DNA polymerase alpha/epsilon subunit B 385 594 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1501 K02321 - csv:101206268 1129.01