Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1523 ATGTCTCCACCGTTTTTCTGCAGTCTCATTCTATTTCTCTGCATAAGCATTCTTACGCAACATTTCCATTATCGAATTTGGATTTCTCTTTTACACGCACCAAAGGTAGAAGATTCTTTTTTGGCGGATATGAATCCTGATAAATTCACCCACAAGACTAATGAGGCACTCGCCGGAGCTCATGAATTGGCATTGAATTCCGGCCATGCTCAATTGACACCGCTTCATTTGGCGGTTGCTTTGATTTCTGATCCGAGTGGGATTTTGAGCCAAGCGATTGCTAGTTCCGGCGGTGACAATGCCCATCAAGAAGTGGAGACGGTTTTCAAGCGGGCATTGAAGAAGCTCCCATCTCAATCCCCTGCTCCCGATGAAGTGCCGGCGAGTACGACTCTGATTAAGGTGATTCGAAGAGCACAAGCTGCGCAAAAATCGCGAGGGGACACGCATTTAGCCGTCGATCAATTAGTTCTTGGCCTTCTCGAGGATTCTCAGATTGGGGATCTGCTTAAAGAAGCTGGTGTCACCACCGCGAAAGTTAAGTCTGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCATCTGGAGACACAACTTTTCAGGCACTCAAAACTTATGGGCGAGACCTGGTAGAACAAGCTGGGAAACTCGACCCAGTTATTGGCCGTGATGAAGAAATTCGTAGAGTGGTGAGGATTTTATCGAGAAGGACTAAGAACAACCCAGTTCTTATTGGGGAGCCTGGAGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCCCAGAGAATTGTAAGGGGAGATGTCCCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGATATGGGTGCTCTGGTTGCAGGGGCTAAGTACAGGGGAGAATTTGAAGAGAGATTGAAGGCAGTATTGAAGGAGGTTGAAGATGCGGAAGGGAAAGTCATATTGTTTATAGATGAGATCCATCTTGTTCTTGGTGCTGGAAGGACAGAAGGGTCTATGGATGCTGCCAATCTTTTCAAGCCTATGCTGGCAAGAGGGCAGCTACGTTGCATTGGGGCAACTACCCTTGAAGAGTACAGGAAGTATGTAGAGAAGGATGCAGCATTTGAGAGGAGGTTTCAACAAGTTTATGTGGCTGAACCGAGTGTGCCTGACACTATCAGCATCCTTCGAGGATTGAAAGAGAGATATGAAGGTCATCATGGTGTTAGGATACAAGATAGAGCTCTCGTGGTTGCAGCGCAGCTTTCGAGTCGGTATATCAGCGGGCGTCACCTTCCTGATAAGGCAATTGATTTAGTTGATGAAGCTTGTGCTAATGTGAGGGTCCAGCTTGATAGTCAGCCTGAAGAAATTGACAACTTGGAGAGGAAACGAATGCAGCTGGAAGTCGAACTCCATGCTCTTGAAAAGGAGAAGGATAAAGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGATGATTTGAGAGATAAGCTTCAACCTTTGTTGATGAAATATCGTAAGGAGAAAGAAAGGATTGATGAGATTAGAAGACTTAAGCAAAGGAGAGAGGAACTACAAATAGCTTTGCAAGAGGCTGAAAGGAGATATGATTTGGCAAGGGCCGCTGATTTGAGATATGGAGCAATCCAAGAGGTAGAATCTGCAATAGCACGGATTGAAGGGAACACTGATGAGAACCTAATGTTGACCGAAACTGTTGGACCGGAACAAGTAGCAGAAGTGGTGAGCCGCTGGACAGGAATACCTGTCACGAGGCTCGGCCAGAATGACAAAGAGAGACTAGTCGGACTTGCAGATAGATTGCACAAGAGAGTTGTGGGACAGAATCAAGCTGTGGATGCTGTTGCCGAGGCTGTTTTACGATCAAGAGCTGGCTTGGGGAGGCCACAACAACCGACAGGATCTTTCCTGTTTCTGGGTCCAACTGGTGTCGGCAAAACCGAGCTTGCAAAGGCACTCGCCGAGCAACTTTTCGATGATGAAAACCTCCTGGTGAGGATTGACATGTCTGAATATATGGAACAACACTCCGTTTCACGCCTCATTGGTGCTCCTCCCGGGTATGTTGGGCATGAAGAAGGAGGCCAACTCACAGAGGCAGTAAGGCGGAGGCCTTACAGTGTTGTTCTGTTTGATGAAGTGGAGAAAGCTCACATATCTGTCTTCAACACACTTCTCCAAGTTTTAGACGATGGAAGACTAACCGATGGTCAAGGCCGGACTGTAGATTTCAGGAACACAGTCATTATCATGACTTCTAATCTTGGAGCTGAACATCTCCTTTCTGGGCTGATGGGCAAGTGCACAATGCAAGTTGCTCGTGATCGAGTTATGCAAGAGGTGCGGAAACACTTTAGGCCAGAGCTGCTTAATCGTCTGGACGAAATTGTTGTATTCGATCCCCTTTCACACGACCAACTGAGGAAAGTTGCTAGGCTGCAAATGAAAGATGTTGCAGCCCGGCTGGCCGAGAGAGGTGTTGCCTTGGCCGTGACCGATGCTGCTCTTGATTACGTCTTAGCAGAGAGCTATGATCCAGTCTATGGTGCGAGACCCATAAGAAGATGGCTGGAGAAGAGGGTGGTGACGGAGCTCTCCAGAATGTTGATCAAAGAAGAAATCGATGAGAATTCAACTGTGTACATTGATGCTGGGGCTGATGGGGATAGGTTGGCGTACAGAGTGGAGAAGAACGGTGGTTTTGTTGATGCAGCGACTGGGAAGAAGTCTGATGTTTTGATTCAAATCAACAATGTCCCAAGAAGCGATGCTGCTCAGACTGTGAAGAAGATGAAGATCGAAGAAATTGATGATGATGAAATGGAAGAGTGA 2856 46.92 MSPPFFCSLILFLCISILTQHFHYRIWISLLHAPKVEDSFLADMNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDPSGILSQAIASSGGDNAHQEVETVFKRALKKLPSQSPAPDEVPASTTLIKVIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYISGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEVESAIARIEGNTDENLMLTETVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLADRLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAARLAERGVALAVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVYIDAGADGDRLAYRVEKNGGFVDAATGKKSDVLIQINNVPRSDAAQTVKKMKIEEIDDDEMEE 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28453494 28457039 - CrPI670011_01g015230.1 Cre01g1523 489068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1523 951 Pfam C-terminal, D2-small domain, of ClpB protein 810 889 IPR019489 -
Cre01g1523 951 FunFam Chaperone clpB 1, putative 195 386 - -
Cre01g1523 951 Pfam AAA domain (Cdc48 subfamily) 640 804 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre01g1523 951 CDD AAA 225 380 - -
Cre01g1523 951 SMART AAA_5 242 387 IPR003593 GO:0016887(InterPro)
Cre01g1523 951 SMART AAA_5 640 784 IPR003593 GO:0016887(InterPro)
Cre01g1523 951 SUPERFAMILY Double Clp-N motif 47 200 IPR036628 -
Cre01g1523 951 ProSitePatterns Chaperonins clpA/B signature 2. 674 692 IPR028299 -
Cre01g1523 951 FunFam ATP-dependent chaperone ClpB 44 191 - -
Cre01g1523 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 644 662 IPR001270 GO:0005524(InterPro)
Cre01g1523 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 718 736 IPR001270 GO:0005524(InterPro)
Cre01g1523 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 689 707 IPR001270 GO:0005524(InterPro)
Cre01g1523 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 751 765 IPR001270 GO:0005524(InterPro)
Cre01g1523 951 SMART ClpB_D2_small_2 810 901 IPR019489 -
Cre01g1523 951 FunFam ATP-dependent chaperone ClpB 387 587 - -
Cre01g1523 951 Gene3D - 193 386 IPR027417 -
Cre01g1523 951 ProSiteProfiles Clp repeat (R) domain profile. 46 190 IPR004176 -
Cre01g1523 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 890 IPR027417 -
Cre01g1523 951 Gene3D - 387 587 IPR027417 -
Cre01g1523 951 Pfam ATPase family associated with various cellular activities (AAA) 247 360 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre01g1523 951 FunFam ATP-dependent Clp protease subunit 593 808 - -
Cre01g1523 951 ProSitePatterns Chaperonins clpA/B signature 1. 338 350 IPR018368 GO:0005524(InterPro)
Cre01g1523 951 Coils Coil 296 316 - -
Cre01g1523 951 CDD RecA-like_ClpB_Hsp104-like 601 807 - -
Cre01g1523 951 Pfam Clp amino terminal domain, pathogenicity island component 60 102 IPR004176 -
Cre01g1523 951 Pfam Clp amino terminal domain, pathogenicity island component 139 189 IPR004176 -
Cre01g1523 951 PANTHER ATP-DEPENDENT CLP PROTEASE 47 905 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Cre01g1523 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 588 IPR027417 -
Cre01g1523 951 Coils Coil 506 543 - -
Cre01g1523 951 Coils Coil 449 498 - -
Cre01g1523 951 Gene3D - 810 908 - -
Cre01g1523 951 Pfam AAA lid domain 387 487 IPR041546 -
Cre01g1523 951 Gene3D - 46 191 IPR036628 -
Cre01g1523 951 Gene3D - 593 809 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1523 K03695 - - csv:101221981 1682.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1523 Cre-Chr1:28453494 Cre06g2163 Cre-Chr6:29469480 3.20E-21 dispersed
Cre01g0300 Cre-Chr1:2399215 Cre01g1523 Cre-Chr1:28453494 6.30E-145 transposed
Cre03g0484 Cre-Chr3:3304571 Cre01g1523 Cre-Chr1:28453494 5.80E-185 transposed
Cre05g1603 Cre-Chr5:25512897 Cre01g1523 Cre-Chr1:28453494 5.20E-237 transposed
Cre05g1805 Cre-Chr5:30094429 Cre01g1523 Cre-Chr1:28453494 1.20E-225 transposed
Cre06g2687 Cre-Chr6:34327108 Cre01g1523 Cre-Chr1:28453494 1.10E-185 transposed
Cre01g1523 Cre-Chr1:28453494 Cre06g2434 Cre-Chr6:32199289 2.10E-262 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63