Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1538 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGGCAGAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTATCTCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACCGCATTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGCGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTCCCTCGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAACGGTACATGCTAACGAAACAGATTATATTGACCATCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAATTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTATAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGCTTTATCCACCATCAAGGCATACTGGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCAACTTCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCAGTATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCAACACATCTTTCTTTCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCAGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCTACACCTGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAACTGGGATGGGGGTGGCTACTACAGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCAGTTAGAAATGGAGATGAGAAAGATGAGAAAATAG 3882 42.86 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLDGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNRDEVDVLWDAKEQFSKDFSAEVLFLDANHVVPNNRPSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQTVHANETDYIDHQAVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIIAKQKTKQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLLYPPSRHTGDSATAISSPTKDFYSYSTSKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVQYQDPTLPLSATTLLQPPALQANTSFFHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPPQPTTGPLPPVPSSSSKPSGGMTLHLGAKGVSSSTDVKTSSIVRGRGFSRSTGMGVATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKMRK 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28597524 28607232 + CrPI670011_01g015380.1 Cre01g1538 489083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1538 1293 PANTHER FORMIN-J 1 1291 IPR051144 -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 640 682 - -
Cre01g1538 1293 Pfam Formin Homology 2 Domain 905 1273 IPR015425 -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 707 723 - -
Cre01g1538 1293 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cre01g1538 1293 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 188 IPR029021 -
Cre01g1538 1293 SMART PTEN_C2_2 198 338 IPR014020 -
Cre01g1538 1293 SMART it6_source 897 1292 IPR015425 -
Cre01g1538 1293 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 810 834 - -
Cre01g1538 1293 ProSiteProfiles Formin homology-2 (FH2) domain profile. 897 1293 IPR015425 -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 707 897 - -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 753 780 - -
Cre01g1538 1293 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cre01g1538 1293 Gene3D - 205 336 - -
Cre01g1538 1293 Coils Coil 1180 1200 - -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 660 682 - -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 579 608 - -
Cre01g1538 1293 Gene3D Formin, FH2 domain 899 1284 IPR042201 -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 726 744 - -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 791 808 - -
Cre01g1538 1293 SUPERFAMILY Formin homology 2 domain (FH2 domain) 795 1293 - -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 869 897 - -
Cre01g1538 1293 MobiDBLite consensus disorder prediction 835 855 - -
Cre01g1538 1293 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1538 Cre-Chr1:28597524 Cre05g1800 Cre-Chr5:29989797 1.40E-250 dispersed
Cre02g1167 Cre-Chr2:10808156 Cre01g1538 Cre-Chr1:28597524 5.90E-28 transposed
Cre01g1538 Cre-Chr1:28597524 Cre06g2459 Cre-Chr6:32402265 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1538 K28090 - csv:101221127 2133.22