Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1541 ATGCAAGTTAACGAAACCGCCATTCCCGCCATTGGAAGAAGCTCCAGAGTTAGGCAACAATTTCTTTTCTCTGTATTAAAGTGCTGTCTATCTGTTCGTAATCTTGCGAAAATCCATGCTCAAATAGTCGTCAGCGGCTTTGCCCAGAAAAATTACATCCTTGTCAATCTTTTGTCGCTCTATATCTCTTTTGGTTCTCTTGGAAGTGCCCAGAAAGTTTTCGAGGACATTAGGACACCGAGTACGACTGTGTGGAACCAGATAATTAGAGGCCATGCGCGGAGCGAAACGCCACAAGAATCGATTGAGCTGTTCAAACGAATGACAGTGGCGGAAGTTGAGGCTGATGGGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGTGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTAGCAAATGGGTATTGGTCCAACTTGTATGTTAGAACGAATTTGATCAATTTATACGCAAATGGTGGAGGTCGAGGGGATTTTGATCTTAAGCGTGCGCGTTACATGTTTGATGAAATGCCTGACTCAAATGTCGTGGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTTGACGAGATGCCTGAAAGGAATGTCCAGACATGGACTACAATGGTTGCAGGGCTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCACTATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAAGTGGCGTTGGTGGCTGCATTGTCAGCTTGTGCTGAATTGGGAGACTTGACATTGGGAAAATGGATTCATAGGTATGTTGAAAGAACATGGCGGAGTAGACACTTCCCAGTCTTGGTGTCTCTGAACAATGCTCTGATGCATATGTATGCAAGTTGTGGTGTTATGGATTTAGCATATAAAGTGTTTGAAGAAATGCCCCAACGAAACACCGTGTCTTGGTCAAGCATTATCACTGGGTTTGCGAAACAGGGTTGTGGAGAAGAAGCCATTAGAGTCTTTCAGTTGATGCTGTGCTCTGGCCAAAATGAAGTTAGACCTGACGAGATAACCTTCATCGGAGTTCTCACTGCTTGTAGTCATGCCGGTTTGATCATCGACGGCATCCGAGTTTTCCAGTCTATGCACAAAACTTTCGGAGTCATCCCGCAGATTGAGCATTATGGATGCATGGTTGATCTCTTAAGCCGTGCAGGTTTACTGAGTGAAGCGTTGAGGCTGATTGAAAGTATGCCAATGAAGCCAAATAATGCTGTGTGGGGAGCACTTCTCAGCGGCTGTAGAATTCACAAGAACGACGAGATCGCATCCCATGTCGCGAAACAATTGGCTTTCGAAATCGATCGCAGCAAACAGGCTGCTGGATACTTCATGCTCCTAGCTAATGTTTATGCTGCAGACAAACGTTGGCGAGACACTGCCGTTATGAGACAGAACATGCTCGACATAGGAGTGAAGAAACCTTCAGGAAGAAGTTGGATCCAGATTAATGGAGTTGTATGTGATTTTGTGGCGGGGGATGAGACTCATAAGGATGTGAGTTTAATTTATGAGATGCTTGGTAACATAACCAGCCAAGCCCGGATGGAAAGCTGCAAATCAGAGACAATATCAGAGGCATTTGTTGTTCTCTCAATCTCATTCTTAACTCTTCTGAAGAAACTATGCAAATGTATATGGATTAATGCTAATTCGAGGAACGGAATCGCGTTTTGTTTAGGTTCTGGTTTAACGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACTCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGCCGAACGGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGACGAAAATCATCAAGAAACTAGTCATCGTGCAGTTCATCTTCGCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCAACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCTCATATTTACTGCTTGCAATCTCAATGTTGGCAAGAGATCCGATTCTGCCTGCTGTTACATGTTCATTTGCTTGCACCAGGTCCTTGTAGCCTTGCGGTTACTGGTGGCTTGAAACCGCTTCTCTTCAGACACAGCCAGCATCTTGTGCTTCTGTCCATCAGCCTTAGTGAAAGCATGCCCTTCAGGAAGAGCTTGTCTCAGTTCCAATCTGCTGCTACTGGAATATCCATCTACAGTATAATAAATCCAAACAAGAATTCGAGCTGCCAAAACGAGGCATTCAGCATAGCTGCAATGCTTCTTGCTGCCTCCCTCTCTGAGATACAAGCTAAACACTGCCATCTTGTTTCATTTTCCAATTTGAAGGCAGTACTTTCTGTTGAGCTAATAACAGTGATCGATTCAATTGTGCGACTTGTTGCAGTAGTTGACTGA 3879 43.88 MQVNETAIPAIGRSSRVRQQFLFSVLKCCLSVRNLAKIHAQIVVSGFAQKNYILVNLLSLYISFGSLGSAQKVFEDIRTPSTTVWNQIIRGHARSETPQESIELFKRMTVAEVEADGFTYSFLLSACVRSRLFREGEQIHGRVLANGYWSNLYVRTNLINLYANGGGRGDFDLKRARYMFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVQTWTTMVAGLAQNGHCKLALSLFNQMRRAGVELDQVALVAALSACAELGDLTLGKWIHRYVERTWRSRHFPVLVSLNNALMHMYASCGVMDLAYKVFEEMPQRNTVSWSSIITGFAKQGCGEEAIRVFQLMLCSGQNEVRPDEITFIGVLTACSHAGLIIDGIRVFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLSEALRLIESMPMKPNNAVWGALLSGCRIHKNDEIASHVAKQLAFEIDRSKQAAGYFMLLANVYAADKRWRDTAVMRQNMLDIGVKKPSGRSWIQINGVVCDFVAGDETHKDVSLIYEMLGNITSQARMESCKSETISEAFVVLSISFLTLLKKLCKCIWINANSRNGIAFCLGSGLTVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKNKAVDVEDNAKRLLLDENHQETSHRAVHLRPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGQPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGKQASAHIYCLQSQCWQEIRFCLLLHVHLLAPGPCSLAVTGGLKPLLFRHSQHLVLLSISLSESMPFRKSLSQFQSAATGISIYSIINPNKNSSCQNEAFSIAAMLLAASLSEIQAKHCHLVSFSNLKAVLSVELITVIDSIVRLVAVVD 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28617391 28626670 - CrPI670011_01g015410.1 Cre01g1541 489086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1541 1292 Pfam E motif 443 508 IPR046848 -
Cre01g1541 1292 MobiDBLite consensus disorder prediction 1113 1142 - -
Cre01g1541 1292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Cre01g1541 1292 ProSiteProfiles CCT domain profile. 1063 1105 IPR010402 GO:0005515(InterPro)
Cre01g1541 1292 FunFam Pentatricopeptide repeat-containing protein chloroplastic 138 287 - -
Cre01g1541 1292 SUPERFAMILY CheY-like 622 750 IPR011006 -
Cre01g1541 1292 Gene3D - 624 835 - -
Cre01g1541 1292 MobiDBLite consensus disorder prediction 1119 1135 - -
Cre01g1541 1292 Pfam CCT motif 1063 1105 IPR010402 GO:0005515(InterPro)
Cre01g1541 1292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Cre01g1541 1292 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 198 264 - -
Cre01g1541 1292 SMART REC_2 624 739 IPR001789 GO:0000160(InterPro)
Cre01g1541 1292 MobiDBLite consensus disorder prediction 902 935 - -
Cre01g1541 1292 MobiDBLite consensus disorder prediction 821 845 - -
Cre01g1541 1292 Pfam Response regulator receiver domain 626 737 IPR001789 GO:0000160(InterPro)
Cre01g1541 1292 Gene3D Tetratricopeptide repeat domain 169 280 IPR011990 GO:0005515(InterPro)
Cre01g1541 1292 Gene3D Tetratricopeptide repeat domain 45 168 IPR011990 GO:0005515(InterPro)
Cre01g1541 1292 MobiDBLite consensus disorder prediction 769 791 - -
Cre01g1541 1292 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 296 531 - -
Cre01g1541 1292 Pfam PPR repeat family 187 220 IPR002885 -
Cre01g1541 1292 ProSiteProfiles Response regulatory domain profile. 625 743 IPR001789 GO:0000160(InterPro)
Cre01g1541 1292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cre01g1541 1292 MobiDBLite consensus disorder prediction 909 928 - -
Cre01g1541 1292 NCBIfam pentatricopeptide repeat 325 354 IPR002885 -
Cre01g1541 1292 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Cre01g1541 1292 NCBIfam pentatricopeptide repeat 191 219 IPR002885 -
Cre01g1541 1292 Pfam PPR repeat 400 425 IPR002885 -
Cre01g1541 1292 Pfam PPR repeat 118 147 IPR002885 -
Cre01g1541 1292 Pfam PPR repeat 325 354 IPR002885 -
Cre01g1541 1292 Pfam PPR repeat 84 109 IPR002885 -
Cre01g1541 1292 Pfam PPR repeat 297 323 IPR002885 -
Cre01g1541 1292 Pfam PPR repeat 221 250 IPR002885 -
Cre01g1541 1292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Cre01g1541 1292 Gene3D Tetratricopeptide repeat domain 355 524 IPR011990 GO:0005515(InterPro)
Cre01g1541 1292 Gene3D Tetratricopeptide repeat domain 281 354 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1541 Cre-Chr1:28617391 Cre01g0331 Cre-Chr1:2742959 2.30E-91 dispersed
Cre11g0834 Cre-Chr11:5529015 Cre01g1541 Cre-Chr1:28617391 1.80E-15 dispersed
Cre01g0816 Cre-Chr1:9273684 Cre01g1541 Cre-Chr1:28617391 4.70E-06 transposed
Cre04g0965 Cre-Chr4:28270709 Cre01g1541 Cre-Chr1:28617391 2.20E-12 transposed
Cre06g0786 Cre-Chr6:1232739 Cre01g1541 Cre-Chr1:28617391 1.60E-07 transposed
Cre09g2496 Cre-Chr9:44218898 Cre01g1541 Cre-Chr1:28617391 9.90E-12 transposed
Cre01g0649 Cre-Chr1:5909648 Cre01g1541 Cre-Chr1:28617391 2.90E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53047 PF00072 Response_reg 2.80E-16 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1541 K12127 - csv:101220107 978.008