Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1543 ATGAACCGTACATTCAATTCATACCCAGATGAAAATTATGCAAATGTTAGGAGATTGATGAGGCAGACTGAGGATGATGATCACAAGAACCTATTGGACAAGGATTCGCACTGTGATTTGAAGAGCAACCACGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGAATCTAAGGTTGGAGATCTTCCTACGGTTATACAGCCAGTTGATAAACTGCTTAGTGGTCTTCTTTCTGCCAAACATGGGGTTGATTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTAAAGTCTAACGGCAGTAGCAGCTCCTCGGATTGTAAATATGTTGTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCGACGTTTCTTTATGCTCTCCTCACAAATCGTGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTCCCATTAACAGATGAGTTCAGCAAATTCAACCAGAATTCTACTAATTGCTATGGGAAAATAATGAAGAATAGCATGACCCCAGATTCAAGTGGAATGATCTTGCCAGCTGTAGTTTATCTTCATTTGGTCCATGATTATGATGCTGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCGTGAATTCGGTTTGGGGTCTGATTACAAGATATTATCAGGCGTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACCGAGAGGCAAACGAATGTTGTTGCTCCAGCTAGTAATCAAAAGTCAAAGGCTGTGCTGATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTAACGGGAGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACGGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATATGTGGCTCAGGGTCTTGGGGGTCTGAAACCATGGATATTGTACAAACCTGAAAATCGTACTGCGCCCGATCCACCTTGCCGTCGAGCCCTGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGACTTAAGTTGGTTGATCAATATGATTGA 1758 42.61 MNRTFNSYPDENYANVRRLMRQTEDDDHKNLLDKDSHCDLKSNHELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVESKVGDLPTVIQPVDKLLSGLLSAKHGVDSCLSRYNSVAYQHKLAYEPSSYLISKLRSYEDLHKRCGVHTESYNKTLEQLKSNGSSSSSDCKYVVWISFSGLGNRILTLASTFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLTDEFSKFNQNSTNCYGKIMKNSMTPDSSGMILPAVVYLHLVHDYDADDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVAPASNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRALSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQYD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28633401 28635915 + CrPI670011_01g015430.1 Cre01g1543 489088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1543 585 Gene3D - 188 242 - -
Cre01g1543 585 Gene3D - 368 529 - -
Cre01g1543 585 Pfam Xyloglucan fucosyltransferase 110 554 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cre01g1543 585 PANTHER FUCOSYLTRANSFERASE 2-RELATED 50 583 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cre01g1543 585 FunFam Galactoside 2-alpha-L-fucosyltransferase 189 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1543 K13681 - - csv:101219153 1099.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1543 Cre-Chr1:28633401 Cre07g1442 Cre-Chr7:29480329 5.30E-144 dispersed
Cre01g1543 Cre-Chr1:28633401 Cre05g2576 Cre-Chr5:36970373 4.60E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2576 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.7 1.7e-157 553.1
Cre01g1543 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.4e-151 531.6
Cre05g2576 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 2.6e-166 582.4
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 2.5e-161 565.8
Cre07g1442 . 58 545 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 3.2e-140 495.7
Cre05g2576 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.3e-137 486.9
Cre01g1543 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 3.4e-133 472.2
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.7e-192 668.7
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 7.9e-184 640.6
Cre08g0811 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 2.8e-168 588.6
Cre05g2576 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 1.4e-125 447.2
Cre05g2576 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.9 1.0e-179 627.1
Cre01g1543 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 1.6e-169 593.2
Cre07g1442 . 64 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.2 3.6e-137 485.7
Cre05g2576 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 2.9e-200 695.3
Cre01g1543 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 5.2e-189 657.9
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.2 3.8e-154 542.0
Cre01g1543 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 1.4e-143 506.9
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 1.1e-148 523.9
Cre01g1543 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 3.1e-138 489.2
Cre05g2576 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 1.3e-152 537.0
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 3.2e-143 505.8
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.9e-190 662.5
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 1.4e-185 646.4
Cre05g2576 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 1.4e-125 447.2
Cre05g2576 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.9 1.0e-179 627.1
Cre01g1543 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 1.6e-169 593.2
Cre07g1442 . 64 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.2 3.6e-137 485.7
Cre05g2576 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 2.9e-200 695.3
Cre01g1543 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 5.2e-189 657.9
Cre05g2576 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.9 1.0e-179 627.1
Cre01g1543 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 1.6e-169 593.2
Cre07g1442 . 64 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.2 3.6e-137 485.7
Cre05g2576 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 1.4e-125 447.2
Cre05g2576 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 1.3e-152 537.0
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 3.2e-143 505.8
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 1.1e-148 523.9
Cre01g1543 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 3.1e-138 489.2
Cre05g2576 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.7 1.7e-157 553.1
Cre01g1543 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.4e-151 531.6
Cre05g2576 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 2.6e-166 582.4
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 2.5e-161 565.8
Cre07g1442 . 58 545 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 3.2e-140 495.7
Cre05g2576 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.3e-137 486.9
Cre01g1543 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 3.4e-133 472.2
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.2 3.8e-154 542.0
Cre01g1543 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 1.4e-143 506.9
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.9e-190 662.5
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 1.4e-185 646.4
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.7e-192 668.7
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 7.9e-184 640.6
Cre08g0811 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 2.8e-168 588.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29