Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1547 ATGGGAATTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTGGGGCTTGTGGTTATGGGAATGTATATAGCGCGGACTATGGGATTAAAACGACGGCATTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATAGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATAAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCCTTTAAGGTCATTACTAGTGATGGTCACTCACTTGTGTCTTACAATGTTGCCCCTTCTAGTTGGTCCTTTGGACAAACCTTTGTTGGTAGACAGTTCCCTTAA 723 47.44 MGIVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGGACGYGNVYSADYGIKTTALSPALFDNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNGWKAMVRNWGQNWQSNDNLVGQSLSFKVITSDGHSLVSYNVAPSSWSFGQTFVGRQFP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28666400 28668993 + CrPI670011_01g015470.1 Cre01g1547 489092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1547 240 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 CDD DPBB_EXPA_N 28 142 - -
Cre01g1547 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cre01g1547 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cre01g1547 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Cre01g1547 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cre01g1547 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Cre01g1547 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Cre01g1547 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Cre01g1547 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Cre01g1547 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Cre01g1547 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 147 IPR007112 -
Cre01g1547 240 FunFam Expansin 147 239 - -
Cre01g1547 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Cre01g1547 240 Pfam Lytic transglycolase 61 137 IPR009009 -
Cre01g1547 240 SUPERFAMILY Barwin-like endoglucanases 25 165 IPR036908 -
Cre01g1547 240 Gene3D - 145 239 IPR036749 -
Cre01g1547 240 Gene3D - 16 143 IPR036908 -
Cre01g1547 240 SMART dpbb_1 61 137 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1547 Cre-Chr1:28666400 Cre07g0895 Cre-Chr7:7955803 7.90E-86 dispersed
Cre01g0644 Cre-Chr1:5873567 Cre01g1547 Cre-Chr1:28666400 1.80E-93 wgd
Cre01g1547 Cre-Chr1:28666400 Cre05g2585 Cre-Chr5:37029535 2.80E-91 wgd
Cre01g1547 Cre-Chr1:28666400 Cre06g2477 Cre-Chr6:32556763 1.90E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1547 - - - 0.0