Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1562 ATGGGAGAGGAAAATACATTGGTGCTTCATGGAATGTGGGCTAGTCCTTTTGCAAAAAGGGTCGAACTTGCCCTTAAAATAAAGGGTATCCCTTTTGAATATGTGGAAGAAGATCTGATGAACAAAAATCCAAACACAATCTTGAAATACAACCCTGTTTACAAGAAAGTTCCTGTGATTGTCCACAATGGCAATCCCATTTGTGAATCGCTTGTGATTCTTGAATACATAGAAGAAGTGTGGAAGAATGATGGCCCTAGTCTTCTACCTCAAGATCCCTACAAACGAGCCCAACTTCGATTTTGGGCTGATTTCATCCACAAACAGTTGTTCGAGAGTACGGTAAAGATGGTGATGGTGGGAGGGGAAGCACTAGAGAAAGCGGTTAAAGAAGTAAGGGAGAAGCTGAAAGTGATTGAAGAACATGGAGTGAAAGAGTTGTTGGGAGATGATGGAAGTAAAGCATTTGCGAATGGAGAAGAAATGGGGTTAGTAGACATAGTAATGTGGTCAGTTCTTGGAGCTTACAAGATTCACGAAGAGGTTTTGGGGGTCAAAATTATAGATGAAAAGGAGACCCCAAGAGTGTACTCATGGCTCAACACCCTTATAAACCACCCCCTTGCCAATGCCATATTGCCTTCTAAACAAAAGGTCATGGGTCTTCTTAATTACGTTAGGAACAATGCTTTAAACTCCTCTGCTGCCGCTTCTTCTTGA 720 41.81 MGEENTLVLHGMWASPFAKRVELALKIKGIPFEYVEEDLMNKNPNTILKYNPVYKKVPVIVHNGNPICESLVILEYIEEVWKNDGPSLLPQDPYKRAQLRFWADFIHKQLFESTVKMVMVGGEALEKAVKEVREKLKVIEEHGVKELLGDDGSKAFANGEEMGLVDIVMWSVLGAYKIHEEVLGVKIIDEKETPRVYSWLNTLINHPLANAILPSKQKVMGLLNYVRNNALNSSAAASS 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28793426 28795064 - CrPI670011_01g015620.1 Cre01g1562 489107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1562 239 Pfam Glutathione S-transferase, N-terminal domain 9 79 IPR004045 -
Cre01g1562 239 SUPERFAMILY GST C-terminal domain-like 79 227 IPR036282 -
Cre01g1562 239 SFLD Glutathione Transferase (cytosolic) 4 234 IPR040079 -
Cre01g1562 239 FunFam Glutathione S-transferase U9 89 233 - -
Cre01g1562 239 FunFam Tau class glutathione S-transferase 1 89 - -
Cre01g1562 239 Gene3D - 89 234 - -
Cre01g1562 239 CDD GST_C_Tau 93 224 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre01g1562 239 Coils Coil 122 142 - -
Cre01g1562 239 CDD GST_N_Tau 7 81 - -
Cre01g1562 239 SUPERFAMILY Thioredoxin-like 6 110 IPR036249 -
Cre01g1562 239 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 85 IPR004045 -
Cre01g1562 239 SFLD Main.3: Omega- and Tau-like 4 234 IPR045073 -
Cre01g1562 239 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 220 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cre01g1562 239 Gene3D Glutaredoxin 1 88 - -
Cre01g1562 239 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 222 IPR010987 -
Cre01g1562 239 Pfam Glutathione S-transferase, C-terminal domain 111 207 IPR004046 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1562 K00799 - - csv:101203766 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1562 Cre-Chr1:28793426 Cre05g0336 Cre-Chr5:3082789 1.20E-44 dispersed
Cre01g1561 Cre-Chr1:28787768 Cre01g1562 Cre-Chr1:28793426 1.80E-90 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75