Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1567 ATGGTTGCTGATAAGGGCAAGAAGGCCAAGCTCTCTGAAAAGCCCGAAGACGACAATTCCGAGGTCATCGATGAGAAACTCGTTATATCCATCGAGAAATTGCAGGAAATTCAAGACGAGCTCGAGAAGTTGAGCTTTTGCCTTCTTCCAATTGAGCTGGACGGAATTGTGTTCACATTAACTCAATTGGTGCTTCAGAATTTCTTTTATGAGTCACGTCTTCTCATTCTACTTCAATTGTTACCCAAAGCTGAAGGCTTTTTTGTAGTTTTGTTGAAGAACGTCAATGCCGACGTTCAATTTCTTTTACCTGCTCTTGGGAAATCTGATTGTTCGTTTTTAAACTCATTAAGGCTGTGTGGCTTTATCAATGAGGAGGCCAGTGATAAAGTATTGGAAGTGGAACAGAAGTACAATGAAGTACGAAAGCCCGTCTATGATAAGCGGAATGAGATCATCAAATCAATTCCTGACTTTTGGTTAACAGCGTTCTTGAGTCATCCTGCTCTTTGTGAACTTTTGACTGAAGAGGACCAGAAGATATTCAAACATCTCACATCCCTTGAAGTGGAAGATTTTAAAGATGTCAAATCGGGTTACTCAATTACTTTTAACTTCAACACCAACCCTTATTTTGAAGATACAAAGCTGACGAAGACCTTCACCTTTCTTGATGAAGGAACAAGGAAAATTAATGCTACATCGATAAAATGGAAAGAGGGAATGGGTTTACCTAATGGGTTTAACCATGAGAAGAAAGGGAACAAGCGACCTCAGGCTGAGGAAAGCTTTTTTAGCTGGTTCAGCGATACAGAACAGAAAGATATTGATGACTTTCATGATGAGGTTGCAGAAATTATCAAGGAGGACTTGTGGCCTAACCCTTTATCCTACTTCAATAATGAGGCTGATGAAGATGAATTGGAGGAAGAAGAATCTAATGAAGAGGGAAAGGAAGACGATGACTCTGATGAGGATGATGACGACCAAGATGATGACAATGACGCCGGGGATGATGAGGACGATGACTAA 1032 40.5 MVADKGKKAKLSEKPEDDNSEVIDEKLVISIEKLQEIQDELEKLSFCLLPIELDGIVFTLTQLVLQNFFYESRLLILLQLLPKAEGFFVVLLKNVNADVQFLLPALGKSDCSFLNSLRLCGFINEEASDKVLEVEQKYNEVRKPVYDKRNEIIKSIPDFWLTAFLSHPALCELLTEEDQKIFKHLTSLEVEDFKDVKSGYSITFNFNTNPYFEDTKLTKTFTFLDEGTRKINATSIKWKEGMGLPNGFNHEKKGNKRPQAEESFFSWFSDTEQKDIDDFHDEVAEIIKEDLWPNPLSYFNNEADEDELEEEESNEEGKEDDDSDEDDDDQDDDNDAGDDEDDD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28817388 28822125 + CrPI670011_01g015670.1 Cre01g1567 489112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1567 343 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 23 329 IPR002164 GO:0000785(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006334(InterPro)|GO:0042393(PANTHER)
Cre01g1567 343 Gene3D Nucleosome assembly protein 157 303 - -
Cre01g1567 343 MobiDBLite consensus disorder prediction 292 343 - -
Cre01g1567 343 MobiDBLite consensus disorder prediction 302 343 - -
Cre01g1567 343 Gene3D - 1 46 - -
Cre01g1567 343 Gene3D - 122 156 - -
Cre01g1567 343 Pfam Nucleosome assembly protein (NAP) 154 301 IPR002164 GO:0005634(InterPro)|GO:0006334(InterPro)
Cre01g1567 343 SUPERFAMILY NAP-like 121 300 IPR037231 -
Cre01g1567 343 Coils Coil 301 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1567 K11290 - - csv:101216549 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0667 Cre-Chr11:3737719 Cre01g1567 Cre-Chr1:28817388 4.10E-17 transposed
Cre01g0629 Cre-Chr1:5693945 Cre01g1567 Cre-Chr1:28817388 9.40E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g538 . . . Bda15g00573 Bpe12g00550 . . . Cmo13g01178 . . . . . . Cpe20g00027 . . . . . . . . . . . . . . . . . Cone13ag0075 Cone19ag0074 Lsi02g00064 Csa01g00536 Chy12g01551 Cme12g02005 Blo13g00012 . . . . . . Bma08g00217 . . . Cma13g01124 . Car13g00959 . . . . . . . . . . Cla04g01206 Cam04g1272 Cec01g1780 Cco01g1827 Clacu04g1300 Cmu04g1276 Cre01g1567 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001128 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 1 2 9 3 2 79