Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1570 | ATGGAAGCTGGAAATGAGCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGATATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTCTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATTCCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCAGGAGTGATGGGGTTGAACTCTGAAGCAATGACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACCACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATACAGATTAGGACAACCCCCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA | 852 | 51.41 | MEAGNEQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGLNSEAMTNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPPGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28832522 | 28834326 | + | CrPI670011_01g015700.1 | Cre01g1570 | 489115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1570 | 283 | MobiDBLite | consensus disorder prediction | 246 | 283 | - | - | |
Cre01g1570 | 283 | ProSiteProfiles | TCP domain profile. | 52 | 106 | IPR017887 | - | |
Cre01g1570 | 283 | Pfam | TCP family transcription factor | 50 | 155 | IPR017887 | - | |
Cre01g1570 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 42 | 162 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cre01g1570 | 283 | MobiDBLite | consensus disorder prediction | 46 | 62 | - | - | |
Cre01g1570 | 283 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cre01g1570 | 283 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1570 | Cre-Chr1:28832522 | Cre11g1770 | Cre-Chr11:29315693 | 4.90E-34 | dispersed | |
Cre02g1732 | Cre-Chr2:30553321 | Cre01g1570 | Cre-Chr1:28832522 | 5.60E-29 | transposed | |
Cre05g1545 | Cre-Chr5:21336149 | Cre01g1570 | Cre-Chr1:28832522 | 1.80E-29 | transposed | |
Cre01g1570 | Cre-Chr1:28832522 | Cre05g2607 | Cre-Chr5:37152907 | 1.50E-43 | wgd | |
Cre01g1570 | Cre-Chr1:28832522 | Cre06g2493 | Cre-Chr6:32663957 | 1.60E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53053 | PF03634 | TCP | 5.00E-36 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1570 | - | - | - | 0.0 |