Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1570 ATGGAAGCTGGAAATGAGCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGATATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTCTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATTCCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCAGGAGTGATGGGGTTGAACTCTGAAGCAATGACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACCACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATACAGATTAGGACAACCCCCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA 852 51.41 MEAGNEQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGLNSEAMTNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPPGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28832522 28834326 + CrPI670011_01g015700.1 Cre01g1570 489115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1570 283 MobiDBLite consensus disorder prediction 246 283 - -
Cre01g1570 283 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Cre01g1570 283 Pfam TCP family transcription factor 50 155 IPR017887 -
Cre01g1570 283 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 162 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre01g1570 283 MobiDBLite consensus disorder prediction 46 62 - -
Cre01g1570 283 MobiDBLite consensus disorder prediction 1 23 - -
Cre01g1570 283 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1570 Cre-Chr1:28832522 Cre11g1770 Cre-Chr11:29315693 4.90E-34 dispersed
Cre02g1732 Cre-Chr2:30553321 Cre01g1570 Cre-Chr1:28832522 5.60E-29 transposed
Cre05g1545 Cre-Chr5:21336149 Cre01g1570 Cre-Chr1:28832522 1.80E-29 transposed
Cre01g1570 Cre-Chr1:28832522 Cre05g2607 Cre-Chr5:37152907 1.50E-43 wgd
Cre01g1570 Cre-Chr1:28832522 Cre06g2493 Cre-Chr6:32663957 1.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53053 PF03634 TCP 5.00E-36 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1570 - - - 0.0