Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1575 ATGGAAGAACCTTCAGCAAAAAAGTCATGCACGTTGCCAGATGATGCTCACAATGGGGGGGAAGATTTAAATCTTCTAGCACGCGTAGTTGACAATGAGGATAAGCAGCATTGCGGCGGAGACCAGTCGGATTCAAGTTCGCTGATCCACCAACTTGGTCGGGACATGTCCATTAATTGTCTCCTCCACTGTTCGAGATCAGAATATGGCTCAATTGCGTCGTTGAATCGGGGCTTCCGATCTGTTATTACGAGTGGTGAACTTTATAAACTACGGAGGCAGATGGGCATCATTGAACATTGGATTTACTTCTCCTGCAGCCTTCTTGAATGGGATGCATATGATCCAAACTCTAACCGCTGGATGCGTCTGCCTATAATGGCATCAAATGAATGTTTCATGTCATCGGACAAGGAGTCCTTGGCTGTTGGGACTGAACTTCTTGTTTTTGGGAAGGAAACGATGTCCCAAGTTATATATAGATACAGTATTTTAAATAACAAATGGTCATCTGGGATGAATATGAATACACCCAGGTTTCTGTTTGGTTCTGCTAGTCTTGGTGAAGTTGCAATACTTGCTGGTGGTTGTGATCCAAAAGGCAATCTCCTGAACTCAGCTGAGCTTTATAATTCCGAAACAGGAACTTGGGTCACTCTTCCTAGAATGAACAAAGCAAGGAAAATGTGCTCAGCAGTATTTCTTGAGGGAAAGTTCTATGTGATTGGCGGAACTGGTGCAGGTAACACAACTCTTACTTGTGGTGAAGAATACGATCTGAAGACTCGGACGTGGCGTGAGATACCTAACATGTACCCGGGCCGAAATGCTGGAGATGGGGCTGCTGTGCCAGTTGCTGCAGTTGAGGCACCTCCTTTGGTTGCAGTTGTAAATGATAATTTGTATGCTGCAGATTATGCACATAGGGAGGTTAAAAGATATGACAAGGCAAGACAAGTGTGGGTGGCTGTAGGCCGATTGCCCGAGCGTGTGGTCTCAACAAATGGTTGGGGGTTGGCATTTAGGGCTTGCGGAGATCGACTAATCGTCATTGGTGGACCGAGGGCTTTAGGTGGACGTATGATTGAGATATACTCTTGGGCCCCAGATCAAGGCCAGCTGCATTGGGGTGTGCTTGCCAGCAGGCAGTTAGATAGAATAGGTCCAATTGAAGGAAGGAAGGAAAACTGGGGTTGCAGTGCAGCGGATGTTGCAGTTGCTCTTCCCCCCCCCCCGAACAAAGGGCCGTGGGGCGTACTAATGGGCTGA 1269 47.2 MEEPSAKKSCTLPDDAHNGGEDLNLLARVVDNEDKQHCGGDQSDSSSLIHQLGRDMSINCLLHCSRSEYGSIASLNRGFRSVITSGELYKLRRQMGIIEHWIYFSCSLLEWDAYDPNSNRWMRLPIMASNECFMSSDKESLAVGTELLVFGKETMSQVIYRYSILNNKWSSGMNMNTPRFLFGSASLGEVAILAGGCDPKGNLLNSAELYNSETGTWVTLPRMNKARKMCSAVFLEGKFYVIGGTGAGNTTLTCGEEYDLKTRTWREIPNMYPGRNAGDGAAVPVAAVEAPPLVAVVNDNLYAADYAHREVKRYDKARQVWVAVGRLPERVVSTNGWGLAFRACGDRLIVIGGPRALGGRMIEIYSWAPDQGQLHWGVLASRQLDRIGPIEGRKENWGCSAADVAVALPPPPNKGPWGVLMG 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28857045 28859203 - CrPI670011_01g015750.1 Cre01g1575 489120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1575 422 Gene3D - 90 386 IPR015915 GO:0005515(InterPro)
Cre01g1575 422 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 39 383 IPR052439 GO:0005634(PANTHER)
Cre01g1575 422 SUPERFAMILY Kelch motif 108 376 IPR015915 GO:0005515(InterPro)
Cre01g1575 422 Pfam Kelch motif 178 224 IPR006652 GO:0005515(InterPro)
Cre01g1575 422 Pfam Kelch motif 226 271 IPR006652 GO:0005515(InterPro)
Cre01g1575 422 SMART kelc_smart 238 285 IPR006652 GO:0005515(InterPro)
Cre01g1575 422 SMART kelc_smart 146 189 IPR006652 GO:0005515(InterPro)
Cre01g1575 422 SMART kelc_smart 190 237 IPR006652 GO:0005515(InterPro)
Cre01g1575 422 FunFam F-box/kelch-repeat protein SKIP11 94 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1575 Cre-Chr1:28857045 Cre02g2418 Cre-Chr2:37538240 2.80E-78 dispersed
Cre01g1575 Cre-Chr1:28857045 Cre05g2613 Cre-Chr5:37199622 4.40E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g528 Blo04g00765 . . . . . . . Cmo13g01169 . . . . . . Cpe20g00034 . . . . . . . . . . . . . . . . Cone16ag0157 . Cone19ag0082 Lsi02g00055 Csa01g00528 Chy12g01559 Cme12g02013 . . . Bda14g00843 . Bpe15g00608 Bma03g00821 . . . . Cma13g01118 . Car13g00952 . . . . . . . . . . Cla04g01214 Cam04g1280 Cec01g1789 Cco01g1835 Clacu04g1309 Cmu04g1284 Cre01g1575 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008261 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 35