Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1583 ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACCGCAGTTTCGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTAGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGCCACGTGGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGTTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA 1152 49.13 MTVTTTQQLFVVSLISLTLLTTAVSYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28921540 28922910 - CrPI670011_01g015830.1 Cre01g1583 489128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1583 383 Gene3D - 34 376 IPR012334 -
Cre01g1583 383 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Cre01g1583 383 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cre01g1583 383 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cre01g1583 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Cre01g1583 383 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cre01g1583 383 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cre01g1583 383 PANTHER PECTATE LYASE 18-RELATED 32 379 IPR045032 GO:0030570(InterPro)
Cre01g1583 383 SMART amb_all 111 308 IPR002022 -
Cre01g1583 383 SUPERFAMILY Pectin lyase-like 34 373 IPR011050 -
Cre01g1583 383 Pfam Pectate lyase 124 302 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1583 Cre-Chr1:28921540 Cre03g0742 Cre-Chr3:6296402 1.60E-88 dispersed
Cre01g1583 Cre-Chr1:28921540 Cre10g1623 Cre-Chr10:30316806 2.60E-70 wgd
Cre01g1583 Cre-Chr1:28921540 Cre05g2625 Cre-Chr5:37313946 6.10E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1583 K01728 - csv:101217103 676.781