Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1584 ATGGAACGAAAGATACGTCGGAGCGTGAAAAACACTCGCGAGGACTTGGACAGGTGGCAAGTGGAGAGAGGGAGTAGAGAGAAGGGAGAATGCGGGAACATGGACAGGTTCTCAACTGAACGCTTACAATTTTCCGGTTCAGCTCTCCATTTTCTTGTAGTGATCATGGGGAGGAAGAAGAGGACCGATGCTGGTGGAGAAAGTTCCGAGTCTCAAGATGGTGGTGGTCGTGGCTCTCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGGGAGTGGGTACCAGGGTGGCAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGTCAAGGCAGTGGTGGTCGTGGCCGAGGAACGTCACAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGAGGTGGGCCATATCAGCATGGAGCACGCAGTAACTATGGTGGTGGTAATCGTGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGTCTCCTCTGTGGCGAGTTCTTCCTCCCACCCATCTTCTGATACTTCATCAATTGATCAACAATTTCAACAGGTTTCCATCCAACAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCTCTGAGACCAGGAAAGGGTAGCTCTGGCATAAGGTGTATCGTTAAAGCTAACCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAATCGAGCTGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTCTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAGAAAGAATTTAAAGTTGTGATCAAGTTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTTTGGATATTGTATTACGCGAACTGCCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGGCTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTTAATCGTGATGTGTCGTCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAAAAGGCTCTCCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACAAGGGAGCTAACTTTCCCAGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTACGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAACTATCTGCCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAAGAAGATATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTAGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTATTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGCAAACAGTACTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGGAATACAGTACTTGTTGATGCGTTATCTAGGCGTATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGAGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCACCTGTGACATTCGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAACAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAACATATTACCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTTCGAGCTCGTTTTTATATGGAACCTGAAACGTCCGATAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGCGTTGGTGCTCGCAGTACACGGGCACCGGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTACTGTTGA 3345 46.13 MERKIRRSVKNTREDLDRWQVERGSREKGECGNMDRFSTERLQFSGSALHFLVVIMGRKKRTDAGGESSESQDGGGRGSQRSAERRDGPQQHGGSGYQGGRGWGSQGGRGGQGSGGRGRGTSQHQHYGGPPDYQGRGRGGGGPYQHGARSNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPVSSVASSSSHPSSDTSSIDQQFQQVSIQQESSQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGVGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28930605 28938207 + CrPI670011_01g015840.1 Cre01g1584 489129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1584 1114 SMART Piwi_a_2 742 1063 IPR003165 GO:0003676(InterPro)
Cre01g1584 1114 MobiDBLite consensus disorder prediction 1 34 - -
Cre01g1584 1114 Pfam Argonaute linker 1 domain 401 450 IPR014811 -
Cre01g1584 1114 Pfam PAZ domain 455 582 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre01g1584 1114 SUPERFAMILY PAZ domain 259 608 IPR036085 GO:0005515(InterPro)
Cre01g1584 1114 MobiDBLite consensus disorder prediction 194 248 - -
Cre01g1584 1114 Gene3D - 811 1114 IPR036397 GO:0003676(InterPro)
Cre01g1584 1114 MobiDBLite consensus disorder prediction 194 238 - -
Cre01g1584 1114 SMART DUF1785_2 399 451 IPR014811 -
Cre01g1584 1114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 245 1069 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cre01g1584 1114 Pfam Mid domain of argonaute 649 724 IPR032473 -
Cre01g1584 1114 FunFam Argonaute 10 630 805 - -
Cre01g1584 1114 Gene3D - 630 805 - -
Cre01g1584 1114 Gene3D paz domain 445 570 - -
Cre01g1584 1114 ProSiteProfiles PAZ domain profile. 453 566 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre01g1584 1114 MobiDBLite consensus disorder prediction 60 182 - -
Cre01g1584 1114 FunFam protein argonaute 10-like 811 1114 - -
Cre01g1584 1114 SMART PAZ_2_a_3 456 588 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre01g1584 1114 CDD Piwi_ago-like 610 1062 IPR045246 -
Cre01g1584 1114 SUPERFAMILY Ribonuclease H-like 737 1063 IPR012337 -
Cre01g1584 1114 ProSiteProfiles Piwi domain profile. 742 1063 IPR003165 GO:0003676(InterPro)
Cre01g1584 1114 CDD PAZ_argonaute_like 451 565 - -
Cre01g1584 1114 Pfam Piwi domain 743 1062 IPR003165 GO:0003676(InterPro)
Cre01g1584 1114 FunFam Protein argonaute-2 445 571 - -
Cre01g1584 1114 Pfam N-terminal domain of argonaute 257 390 IPR032474 -
Cre01g1584 1114 Pfam Argonaute linker 2 domain 592 638 IPR032472 -
Cre01g1584 1114 Pfam Glycine-rich region of argonaut 128 238 IPR024357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1186 Cre-Chr1:24055506 Cre01g1584 Cre-Chr1:28930605 2.60E-305 dispersed
Cre01g1584 Cre-Chr1:28930605 Cre05g0589 Cre-Chr5:5234117 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1584 K11593 - csv:101212130 1852.41