Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1597 ATGTTCAAAGTCTTCGCAGTCGCTGCGCTGCCTTGGTCAGCTCTTTTACTATTACAATCTCCTCTTCCCCTCGCAATGCAGTTCTACACTTCTCCAACTGTTCACACCTTCACTTTCTCCTCCTCTCTGCTGCCATGGAATTCGCTTTGGAATCCAGTTCTAAGTAGGCGTCCGCCTCTCTCTCACTCTCAGGCGAGGGCGCGCCACACACTTACGCGCCTTAATTCCTTCAGCGCACTCTGTCTGATATTTTCAGCTTTCGATAATCCCTTCTTTACACTGTCTAGATACATAGGCATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACCGATCCACCAATGTTTGATGAGCAAGTGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAACTTCTTCTGGCATGTATGGTAGTGAAGCAATTCTTGTTGGTCATACTGGTCCCCTACGAATTGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAATATACCGGCAGTAAGCCTGAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAAACGGCAGAGCTGTTGGCAGAAAAAATCCCTTCCTTCAAGGCGACAGATGAGTCTGATTGGTCCATTCATAACTATGCTGGTAGAAATGAACACTTAATAAGGTCTGGCCAGCTGGGATTGTGCAATGATCCTTTCTGTATTACTTGCCCAACATATAATTTCAAAGCATCACAACAGAAAAGCTCAAGAATTTCAGGCATATTTGACGCCAAGTTTCATAACGATCTCTATGGAGGAGGGAAAGGTTGGGCGGGAAGCTTTCAGTCATTCTGGTGCTTCTTGCTTCCATATATTCCAGGAGTAATGAATCCTCATGCAAAAGTTGTTCAGCAGTGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGACCCATTATTTTTCTTCTTGCTGTCTGTCCAATATAAGAATAAGTGCATCGTTATTGATTGGTCTTTGACCACAGCATTGGTGGTTTTCCGGAGCCTGACTGACTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTACGTGGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCTATGAATTACATTAAAGGAAAATTTTTTGTAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATTATAGTTTTTCTAATCCTGCCAAAGTCTTTGGGGTCATCTGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGTGCAATATATTCCCAGACTGTATAGATTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTCGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTGACCTTTATGTTGGCTGGTCATGTTGTTGGGTCTTTCTGGTATCTCCTTGGGCTTCAGGGGGTGAATCGATGTTTTCGAGAGGCCTGCACTAACACTGGAAATGAGAGCTGCTTGGAATATATAGATTGTGGGCATGGGAATGAAGCTGGGAGTCAGATTCAGGATCCACAGCGGGATTCATGGAAAAATAACGAGAATGCTACAGCATGTTTTGCCAAAGAAGGTTTCAATTATGGAATCTATCTTCAGGCTGTAAACCTTACTACAGAAAATAATATAATCACGAGATATACTTACTCCTTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTTACTATGGCTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTAAGACGTCGTGATGTTGAGCAATGGATGGAGCATCGTCGCTTACCAGAGAATTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTCGAAAATTTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTTAACAAGGTTCGCATTTTTGCACTGATGGACTATGAGCCTATTTTAGACGCAATACGTGAGAGACTGCGGCAGAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCATTGAGAAGATGGTTTTCATCGTACGTGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAGCATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCATCAAGTTCCAGCACCGAGATTGGTCAGCAATCGGACAGTAAAATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGTTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCACCCTACTGGAGGTACCTAGCGGCAACGCGCATTCAAGTAGCTTGGAGATACAGGAAAAGACGTCTATCTCGAGTTCAAACATCTCAATCTAACTAA 2622 42.91 MFKVFAVAALPWSALLLLQSPLPLAMQFYTSPTVHTFTFSSSLLPWNSLWNPVLSRRPPLSHSQARARHTLTRLNSFSALCLIFSAFDNPFFTLSRYIGMAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPATSSGMYGSEAILVGHTGPLRIERSSFMVSGSKYTGSKPEKLSQSKPGVTESKTAELLAEKIPSFKATDESDWSIHNYAGRNEHLIRSGQLGLCNDPFCITCPTYNFKASQQKSSRISGIFDAKFHNDLYGGGKGWAGSFQSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQYKNKCIVIDWSLTTALVVFRSLTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYIKGKFFVDLLVVLPLPQIIVFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHVVGSFWYLLGLQGVNRCFREACTNTGNESCLEYIDCGHGNEAGSQIQDPQRDSWKNNENATACFAKEGFNYGIYLQAVNLTTENNIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLAWCLEHSSINKDMKRHQVPAPRLVSNRTVKCLSNVEAFSLRVADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRVQTSQSN 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29018709 29037744 + CrPI670011_01g015970.1 Cre01g1597 489142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1597 873 Gene3D Helix hairpin bin 629 695 - -
Cre01g1597 873 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 293 866 - -
Cre01g1597 873 CDD CAP_ED 703 821 IPR000595 -
Cre01g1597 873 Gene3D Jelly Rolls 701 827 IPR014710 -
Cre01g1597 873 SUPERFAMILY cAMP-binding domain-like 631 829 IPR018490 -
Cre01g1597 873 Pfam Ion transport protein 309 629 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre01g1597 873 Gene3D - 301 628 - -
Cre01g1597 873 SUPERFAMILY Voltage-gated potassium channels 302 626 - -
Cre01g1597 873 ProSiteProfiles cAMP/cGMP binding motif profile. 716 773 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1597 Cre-Chr1:29018709 Cre06g2161 Cre-Chr6:29450966 3.00E-114 dispersed
Cre01g1597 Cre-Chr1:29018709 Cre10g1605 Cre-Chr10:30159402 8.90E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1597 K05391 - csv:101215903 1424.84