Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1601 | ATGTTTTCTCTCAATAATGAATGCTTTATTTCAATTACTTTTCCATTTCTCTGTGTCGTCATATTACTGCAGACCTTTGCCTCAAAGTTGTATGGATCAAAGCGTTGTGAAGACTGCCCTACATTGAGGAAGGTGGTGGGACCCGAAGCCGACGTGACGTGTCCTTTGGTTGCTTCAGGGGAGGATGTAGTTAAACTTGAACTTATATTTCAACCCTTCTTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCTCCTCCTCCCAAGTTCAAACTGGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACATGGATGGAGCCAGAGTGTGATAACCTTATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTATGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTCGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTCAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTCAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTTATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGACGCTCAGCACATAGCGGTGCTGCGCGTGGTGATTAGGGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCGACAGAGTCTTGAAGGAAGTCGAGGCACTGCCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTTGAAGATGGTGTGAGAGTTACAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTTCATATTGGAGACGGCTTGTGGATGGCAGGAGAACTGTTTGCTTCCTTGCTGGTGCAGTCAGTGTTTGTGACTTTGTAGTGTTGGGTTTCCTATTTCGCCTATGCGTCGGATTTCTTCTCGAAGATTGTCGAGCCACTGAGTACACTTTCAATGTCATGATTCGTGGCCACTTGACGACTTGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCAATGACATGATTTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTTAGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGATGGTGTTGTATTGTTACATGAGTGCTGCATGGATCCATACGTATGGGAAGTGGTGATTTTAGTGAAGGAGGATTTAGTGTTCAATTCTTATATGAGAATGGACGCATTAACTCTGAGGAGAAAGGTACAAAGAAAAGCTAAAATCAGAGGGTTGTACAGCATCAAACTAGAAGCTCTTGACGAGATTGTTTCCTTTGTTTCTCGCTTCCAAGGCTGCGAAGATGATGCTATAGATCTTGTTCTCGATAATCTCCATGATGAATCTTTGAAATCTTCAATATTAGACAAGGATGCGGTGCATCGGGTTATCAGCATTATGCTTGCAGCTGATGAAGTGGGAGAAGAAAGTCCCACTACCTCTACCAGTACACATGCTCTTTGCATCATCAACGCTTTTGATATCTCCAAGTTTCGTTATGATCCCATCAAAAAGATCTTCCATCTACATACAGGAAGCCTTCCAATTCATGGGGATGCTCCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTCTGCTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAATGACATGCACTGCAGTTTTCATTAATAATAAGCACAAGATAACTACAGGTCTATTTACAGAGAACACCATTGTTGTAGCAGAAGGAGAGATGCTCGTGGAGGGTATTTTTCAGGTTGTTACATGTGGATTTCCTCCACTAGAGGAGAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTACCGAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAGAAGAAAGCTGTTAATGATATGTTTGTCATACTTTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTATTTGTTTTGATGGGAAATTTTTGTTCCCGTCCATGCAATCTTGCCTTTAATTCTTTCTCAAGTCTCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCAAGATTACAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACCGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAGATGCACGTCCCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACCCAGGAAATTGTATTTTTCCGACAAGACCTTCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTCGAGCATCTTGTTGCGACTATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATACCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTTAACCGAAAGGAGCGTTAGAAGAATGAGGGAAATGTTTTCAACATCCAACTTTGGTAAGTGTGGTTGTCCATACTTTTTGAGAGTTGCTGAAGTGTAG | 3801 | 44.75 | MFSLNNECFISITFPFLCVVILLQTFASKLYGSKRCEDCPTLRKVVGPEADVTCPLVASGEDVVKLELIFQPFFADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDIDRVLKEVEALPTRVAVKAAEVKAGVEDGVRVTKHVKKSEREIEEEVTSYWRRLVDGRRTVCFLAGAVSVCDFVVLGFLFRLCVGFLLEDCRATEYTFNVMIRGHLTTCYAKMKYVGEAVGLFREMMEAGFEPNDMILVMEVGFELDEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVVLLHECCMDPYVWEVVILVKEDLVFNSYMRMDALTLRRKVQRKAKIRGLYSIKLEALDEIVSFVSRFQGCEDDAIDLVLDNLHDESLKSSILDKDAVHRVISIMLAADEVGEESPTTSTSTHALCIINAFDISKFRYDPIKKIFHLHTGSLPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEISPIQSLVGQTGRKWVMGMTCTAVFINNKHKITTGLFTENTIVVAEGEMLVEGIFQVVTCGFPPLEERDKSLKLLAGQDFFGGGALPKEETLRLADLEKKAVNDMFVILSDIWLDSEEAMGKLETILDGFENVEVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLQEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSALLTERSVRRMREMFSTSNFGKCGCPYFLRVAEV | 1266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29070508 | 29081106 | + | CrPI670011_01g016010.1 | Cre01g1601 | 489146 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1601 | 1266 | FunFam | Glutamate decarboxylase | 133 | 427 | - | - | |
Cre01g1601 | 1266 | SUPERFAMILY | PLP-dependent transferases | 81 | 512 | IPR015424 | - | |
Cre01g1601 | 1266 | Gene3D | - | 1001 | 1233 | - | - | |
Cre01g1601 | 1266 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 104 | 448 | IPR002129 | GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro) | |
Cre01g1601 | 1266 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 602 | 636 | IPR002885 | - | |
Cre01g1601 | 1266 | PANTHER | GLUTAMATE DECARBOXYLASE | 80 | 560 | IPR010107 | GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro) | |
Cre01g1601 | 1266 | Gene3D | - | 72 | 132 | - | - | |
Cre01g1601 | 1266 | Pfam | DNA polymerase alpha/epsilon subunit B | 992 | 1197 | IPR007185 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Cre01g1601 | 1266 | NCBIfam | glutamate decarboxylase | 84 | 511 | IPR010107 | GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro) | |
Cre01g1601 | 1266 | FunFam | Glutamate decarboxylase | 428 | 515 | - | - | |
Cre01g1601 | 1266 | CDD | DOPA_deC_like | 126 | 506 | - | - | |
Cre01g1601 | 1266 | Gene3D | Tetratricopeptide repeat domain | 582 | 660 | IPR011990 | GO:0005515(InterPro) | |
Cre01g1601 | 1266 | Gene3D | - | 720 | 792 | - | - | |
Cre01g1601 | 1266 | FunFam | Glutamate decarboxylase | 75 | 132 | - | - | |
Cre01g1601 | 1266 | Gene3D | - | 428 | 515 | - | - | |
Cre01g1601 | 1266 | Gene3D | - | 133 | 427 | IPR015421 | - | |
Cre01g1601 | 1266 | NCBIfam | pentatricopeptide repeat | 611 | 637 | IPR002885 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1601 | Cre-Chr1:29070508 | Cre09g1837 | Cre-Chr9:36730179 | 2.70E-217 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1601 | K01580 | - | csv:101207444 | 940.258 |