Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1601 ATGTTTTCTCTCAATAATGAATGCTTTATTTCAATTACTTTTCCATTTCTCTGTGTCGTCATATTACTGCAGACCTTTGCCTCAAAGTTGTATGGATCAAAGCGTTGTGAAGACTGCCCTACATTGAGGAAGGTGGTGGGACCCGAAGCCGACGTGACGTGTCCTTTGGTTGCTTCAGGGGAGGATGTAGTTAAACTTGAACTTATATTTCAACCCTTCTTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCTCCTCCTCCCAAGTTCAAACTGGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACATGGATGGAGCCAGAGTGTGATAACCTTATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTATGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTCGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTCAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTCAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTTATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGACGCTCAGCACATAGCGGTGCTGCGCGTGGTGATTAGGGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCGACAGAGTCTTGAAGGAAGTCGAGGCACTGCCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTTGAAGATGGTGTGAGAGTTACAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTTCATATTGGAGACGGCTTGTGGATGGCAGGAGAACTGTTTGCTTCCTTGCTGGTGCAGTCAGTGTTTGTGACTTTGTAGTGTTGGGTTTCCTATTTCGCCTATGCGTCGGATTTCTTCTCGAAGATTGTCGAGCCACTGAGTACACTTTCAATGTCATGATTCGTGGCCACTTGACGACTTGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCAATGACATGATTTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTTAGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGATGGTGTTGTATTGTTACATGAGTGCTGCATGGATCCATACGTATGGGAAGTGGTGATTTTAGTGAAGGAGGATTTAGTGTTCAATTCTTATATGAGAATGGACGCATTAACTCTGAGGAGAAAGGTACAAAGAAAAGCTAAAATCAGAGGGTTGTACAGCATCAAACTAGAAGCTCTTGACGAGATTGTTTCCTTTGTTTCTCGCTTCCAAGGCTGCGAAGATGATGCTATAGATCTTGTTCTCGATAATCTCCATGATGAATCTTTGAAATCTTCAATATTAGACAAGGATGCGGTGCATCGGGTTATCAGCATTATGCTTGCAGCTGATGAAGTGGGAGAAGAAAGTCCCACTACCTCTACCAGTACACATGCTCTTTGCATCATCAACGCTTTTGATATCTCCAAGTTTCGTTATGATCCCATCAAAAAGATCTTCCATCTACATACAGGAAGCCTTCCAATTCATGGGGATGCTCCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTCTGCTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAATGACATGCACTGCAGTTTTCATTAATAATAAGCACAAGATAACTACAGGTCTATTTACAGAGAACACCATTGTTGTAGCAGAAGGAGAGATGCTCGTGGAGGGTATTTTTCAGGTTGTTACATGTGGATTTCCTCCACTAGAGGAGAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTACCGAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAGAAGAAAGCTGTTAATGATATGTTTGTCATACTTTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTATTTGTTTTGATGGGAAATTTTTGTTCCCGTCCATGCAATCTTGCCTTTAATTCTTTCTCAAGTCTCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCAAGATTACAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACCGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAGATGCACGTCCCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACCCAGGAAATTGTATTTTTCCGACAAGACCTTCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTCGAGCATCTTGTTGCGACTATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATACCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTTAACCGAAAGGAGCGTTAGAAGAATGAGGGAAATGTTTTCAACATCCAACTTTGGTAAGTGTGGTTGTCCATACTTTTTGAGAGTTGCTGAAGTGTAG 3801 44.75 MFSLNNECFISITFPFLCVVILLQTFASKLYGSKRCEDCPTLRKVVGPEADVTCPLVASGEDVVKLELIFQPFFADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDIDRVLKEVEALPTRVAVKAAEVKAGVEDGVRVTKHVKKSEREIEEEVTSYWRRLVDGRRTVCFLAGAVSVCDFVVLGFLFRLCVGFLLEDCRATEYTFNVMIRGHLTTCYAKMKYVGEAVGLFREMMEAGFEPNDMILVMEVGFELDEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVVLLHECCMDPYVWEVVILVKEDLVFNSYMRMDALTLRRKVQRKAKIRGLYSIKLEALDEIVSFVSRFQGCEDDAIDLVLDNLHDESLKSSILDKDAVHRVISIMLAADEVGEESPTTSTSTHALCIINAFDISKFRYDPIKKIFHLHTGSLPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEISPIQSLVGQTGRKWVMGMTCTAVFINNKHKITTGLFTENTIVVAEGEMLVEGIFQVVTCGFPPLEERDKSLKLLAGQDFFGGGALPKEETLRLADLEKKAVNDMFVILSDIWLDSEEAMGKLETILDGFENVEVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLQEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSALLTERSVRRMREMFSTSNFGKCGCPYFLRVAEV 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29070508 29081106 + CrPI670011_01g016010.1 Cre01g1601 489146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1601 1266 FunFam Glutamate decarboxylase 133 427 - -
Cre01g1601 1266 SUPERFAMILY PLP-dependent transferases 81 512 IPR015424 -
Cre01g1601 1266 Gene3D - 1001 1233 - -
Cre01g1601 1266 Pfam Pyridoxal-dependent decarboxylase conserved domain 104 448 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cre01g1601 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Cre01g1601 1266 PANTHER GLUTAMATE DECARBOXYLASE 80 560 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cre01g1601 1266 Gene3D - 72 132 - -
Cre01g1601 1266 Pfam DNA polymerase alpha/epsilon subunit B 992 1197 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cre01g1601 1266 NCBIfam glutamate decarboxylase 84 511 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cre01g1601 1266 FunFam Glutamate decarboxylase 428 515 - -
Cre01g1601 1266 CDD DOPA_deC_like 126 506 - -
Cre01g1601 1266 Gene3D Tetratricopeptide repeat domain 582 660 IPR011990 GO:0005515(InterPro)
Cre01g1601 1266 Gene3D - 720 792 - -
Cre01g1601 1266 FunFam Glutamate decarboxylase 75 132 - -
Cre01g1601 1266 Gene3D - 428 515 - -
Cre01g1601 1266 Gene3D - 133 427 IPR015421 -
Cre01g1601 1266 NCBIfam pentatricopeptide repeat 611 637 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1601 Cre-Chr1:29070508 Cre09g1837 Cre-Chr9:36730179 2.70E-217 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1601 K01580 - csv:101207444 940.258