Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1606 | ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGTTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCATAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAACAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACCAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGACGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACAACGACGACGACGACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA | 1362 | 51.25 | MIGNTATSASPVLPSSEPYSCLENGNNNNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29131245 | 29133280 | + | CrPI670011_01g016060.1 | Cre01g1606 | 489151 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1606 | 453 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 168 | 202 | - | - | |
Cre01g1606 | 453 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
Cre01g1606 | 453 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 387 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre01g1606 | 453 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 101 | 135 | - | - | |
Cre01g1606 | 453 | MobiDBLite | consensus disorder prediction | 205 | 224 | - | - | |
Cre01g1606 | 453 | Coils | Coil | 321 | 383 | - | - | |
Cre01g1606 | 453 | Gene3D | Classic Zinc Finger | 41 | 104 | - | - | |
Cre01g1606 | 453 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cre01g1606 | 453 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 87 | IPR036236 | - | |
Cre01g1606 | 453 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
Cre01g1606 | 453 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Cre01g1606 | 453 | SMART | c2h2final6 | 141 | 168 | IPR013087 | - | |
Cre01g1606 | 453 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cre01g1606 | 453 | CDD | ATP-synt_Fo_b | 317 | 398 | - | - | |
Cre01g1606 | 453 | Pfam | Zinc finger, C2H2 type | 64 | 86 | IPR013087 | - | |
Cre01g1606 | 453 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 86 | IPR013087 | - | |
Cre01g1606 | 453 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 140 | 164 | - | - | |
Cre01g1606 | 453 | FunFam | protein indeterminate-domain 12-like | 43 | 111 | - | - | |
Cre01g1606 | 453 | Gene3D | Classic Zinc Finger | 120 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1606 | Cre-Chr1:29131245 | Cre09g1848 | Cre-Chr9:36885334 | 1.30E-92 | dispersed | |
Cre01g1606 | Cre-Chr1:29131245 | Cre01g1377 | Cre-Chr1:26983274 | 8.70E-110 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53060 | PF00096 | zf-C2H2 | 0.0043 | CL0361 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1606 | K25871 | - | csv:101209426 | 741.88 |