Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1606 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGTTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCATAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAACAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACCAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGACGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACAACGACGACGACGACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1362 51.25 MIGNTATSASPVLPSSEPYSCLENGNNNNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29131245 29133280 + CrPI670011_01g016060.1 Cre01g1606 489151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1606 453 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 168 202 - -
Cre01g1606 453 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cre01g1606 453 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 387 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre01g1606 453 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Cre01g1606 453 MobiDBLite consensus disorder prediction 205 224 - -
Cre01g1606 453 Coils Coil 321 383 - -
Cre01g1606 453 Gene3D Classic Zinc Finger 41 104 - -
Cre01g1606 453 MobiDBLite consensus disorder prediction 1 51 - -
Cre01g1606 453 SUPERFAMILY beta-beta-alpha zinc fingers 61 87 IPR036236 -
Cre01g1606 453 SMART c2h2final6 64 86 IPR013087 -
Cre01g1606 453 SMART c2h2final6 105 135 IPR013087 -
Cre01g1606 453 SMART c2h2final6 141 168 IPR013087 -
Cre01g1606 453 MobiDBLite consensus disorder prediction 1 37 - -
Cre01g1606 453 CDD ATP-synt_Fo_b 317 398 - -
Cre01g1606 453 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Cre01g1606 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cre01g1606 453 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 140 164 - -
Cre01g1606 453 FunFam protein indeterminate-domain 12-like 43 111 - -
Cre01g1606 453 Gene3D Classic Zinc Finger 120 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1606 Cre-Chr1:29131245 Cre09g1848 Cre-Chr9:36885334 1.30E-92 dispersed
Cre01g1606 Cre-Chr1:29131245 Cre01g1377 Cre-Chr1:26983274 8.70E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53060 PF00096 zf-C2H2 0.0043 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1606 K25871 - csv:101209426 741.88