Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1617 ATGAAGTATCGTTATGCGATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCCCTATCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGCGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATGGACATGATTCATGGCAATATTCGGTGCTCTGTTGGAAATGGACTATCCACATCCTTTTGGCTTGACCATTGGACCACCGAAGCTCTCCACAAGGTTTTTCCCAAGGCCTGCACCGATTCTGAACACTTCCTCCATACCGCAGTTAACACTAGGAACGCGGTTCCTATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAGTCCGATTCTTCCAGCCCTGATGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCTCCCATCAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATCCCAGCAGCAGCAGCTTCAGAGGTACCGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCCTCGAAGTCTGACCCAATTTCCGGCTTGAACTTGGGGCCGAAGGCCAAGAAGTCGGCCGATGTGAAAGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCCCTTGGGCTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTCTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCTAGCAATCTTTCCAGGAATTGCGGCGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTAGTGGGGGGAAGAGAGAGGCGGCGAGTCAGAAAAGATTGGGTTTTCAGGAAAATGTTAAAAGCTATATTCGCGATGCTAGCAATTCCGACAATATGCCAATTGGTAATGCACCATCTACTGAGCGGAGTCCAAATTTGTTAGGACAGCCTCGGGTACAGAATGTCGCTTCATCCAATGAAGCTGGATGCTATGAATCATCATGGGGATGTTCTGACGGATTAAGAAATTTAGATTTCTGTACACCAGAGTCCTCTTATGATTGTGAAAATCCCAAGGAGTCTGAATCTCCGCGCTTTCAAGCTATACTGCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCCGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGCGTACGACCTTTCCCACTTTGGAAGTCACGCCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAAAAAAATGTCGATGCTCATCCAGAGTGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCTATGTCATCCCCTGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACTCGAATGTTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAGGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAGCTTCGTCAGTCGAGAAATCTGCATTCTGCTGATAAACGCATTGCTCCAGCTATGGGAAGGGAAGTGAAAAGTTCTAGTGCAGCCAAGGCTTCTAAGACAACTTCTTCCAGGAAGTCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTCTCAACATCTCCCGATGATACTTCGAAGAACTTGGTATCTCCTACTGGCAGAGACCGGTTGGCTTCTTGGAAAAGATTGCCTTCTCCAGCAGCAAAAAGTGTGAAAGAACCTACTTTGAAGGATCAGGGTGATAATAAGAAATTTAAATCTTTGAACATGTCAAAAATCAGGATGGGTGTTTCTGAAGCTGATTTGCCTGCTGCTAAGGTTTCTGAGCTTCCTCCGCCCAGAGATTCTCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAAGAAGAAATTCCAACTGCAAATGTGGAAGATCATTCAAGAATTTGCGCAGTTGCTGATCGATGTGACCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAAATGATCGAGTCTTTTACGCAAAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCTAATTCTAGTGTGACTGAAGAATCAGATATTTCCCCAAAACACAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTTATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCCTTATTAACACCAAGGACCAGTCAGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACATGATGATCTTACGCAGATCAGTGATCTTGCAGATATTGCACGCTATTCAGCAAATACACCTCTGGGTGATGATTGCTCGATGCAATACCTGCTAACATGCCTTGAGGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCGCTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACTCCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCAATCCATTCTTCAAAGGACCGTACATCAATTGACGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGGTTAATTTTCACACTGATGCTTAA 3483 44.59 MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPPYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEMDMIHGNIRCSVGNGLSTSFWLDHWTTEALHKVFPKACTDSEHFLHTAVNTRNAVPMVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKNKSAAKDEPQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSDPISGLNLGPKAKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSSGGKREAASQKRLGFQENVKSYIRDASNSDNMPIGNAPSTERSPNLLGQPRVQNVASSNEAGCYESSWGCSDGLRNLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNVDAHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIAPAMGREVKSSSAAKASKTTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRLASWKRLPSPAAKSVKEPTLKDQGDNKKFKSLNMSKIRMGVSEADLPAAKVSELPPPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARYSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVNFHTDA 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29238141 29254792 + CrPI670011_01g016170.1 Cre01g1617 489162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1617 1160 Gene3D Phosphorylase Kinase; domain 1 1063 1158 - -
Cre01g1617 1160 ProSiteProfiles Protein kinase domain profile. 1124 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1617 1160 MobiDBLite consensus disorder prediction 732 752 - -
Cre01g1617 1160 Coils Coil 878 898 - -
Cre01g1617 1160 Gene3D - 2 76 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 702 719 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 686 836 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 386 458 - -
Cre01g1617 1160 Coils Coil 551 571 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 73 92 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 897 920 - -
Cre01g1617 1160 FunFam RNA polymerase II subunit A C-terminal domain phosphatase 1 70 - -
Cre01g1617 1160 SUPERFAMILY Protein kinase-like (PK-like) 1108 1156 IPR011009 -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 964 986 - -
Cre01g1617 1160 Pfam Ssu72-like protein 92 186 IPR006811 GO:0004721(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Cre01g1617 1160 Pfam Ssu72-like protein 4 73 IPR006811 GO:0004721(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Cre01g1617 1160 MobiDBLite consensus disorder prediction 896 930 - -
Cre01g1617 1160 PANTHER RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE 92 183 IPR006811 GO:0004721(InterPro)|GO:0005634(InterPro)|GO:0005847(PANTHER)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0006397(InterPro)|GO:0008420(PANTHER)|GO:0070940(PANTHER)
Cre01g1617 1160 MobiDBLite consensus disorder prediction 246 266 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 300 314 - -
Cre01g1617 1160 Gene3D - 83 230 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 432 458 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 774 788 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 282 299 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 386 417 - -
Cre01g1617 1160 MobiDBLite consensus disorder prediction 246 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1617 Cre-Chr1:29238141 Cre09g2005 Cre-Chr9:39116551 5.10E-154 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1617 K08789 - csv:101214945 1655.57