Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1619 | ATGTACGACAGTAGCGTTGTCTGGTGCGACATACGGATAAACTTCCCAAAGATGTGGGTGTTTGGTAATTCATTCAAGCCTCAATCAAATTTGATTTGGTCAATTGCGATTAAAGCCTTGCTTGCTGAAAATTGGTTTGAAAGAAACCAAAGGGTCTTTCAAGACAAATCTCTCACTTCTAGCGAATGTTATGAAGTTGCAAGGCTTTTTGCTTACTCTTGGTGTTTTTTCTTGGTGCAAGATATATGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCGCCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCTTGGCCTCAGATACCTGAAGAGATGAGCCATGATGCTCGAGATTTAATTGATCGATTATTGACAGAAGATCCTAACCAGCGACTTGGAGCTATAGGCGCATCAGAGGTGAAGCAGCATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAACCATTCAGATGGTCATGTCTATCCACACAGTGAACTTGAAGATTCGAGTGATGCCGACAGCTTAAGTGGTGATAGTAGTTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA | 861 | 42.28 | MYDSSVVWCDIRINFPKMWVFGNSFKPQSNLIWSIAIKALLAENWFERNQRVFQDKSLTSSECYEVARLFAYSWCFFLVQDICATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDARDLIDRLLTEDPNQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDGHVYPHSELEDSSDADSLSGDSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDA | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29272536 | 29289829 | + | CrPI670011_01g016190.1 | Cre01g1619 | 489164 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1619 | 286 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 166 | 269 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre01g1619 | 286 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 82 | 261 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Cre01g1619 | 286 | Gene3D | Transferase(Phosphotransferase) domain 1 | 84 | 183 | - | - | |
Cre01g1619 | 286 | SMART | serkin_6 | 25 | 165 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre01g1619 | 286 | ProSiteProfiles | Protein kinase domain profile. | 1 | 165 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre01g1619 | 286 | Pfam | Protein kinase domain | 84 | 165 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre01g1619 | 286 | Gene3D | Phosphorylase Kinase; domain 1 | 184 | 194 | - | - | |
Cre01g1619 | 286 | MobiDBLite | consensus disorder prediction | 208 | 242 | - | - | |
Cre01g1619 | 286 | SUPERFAMILY | Protein kinase-like (PK-like) | 84 | 203 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1619 | Cre-Chr1:29272536 | Cre09g2005 | Cre-Chr9:39116551 | 7.50E-67 | dispersed | |
Cre01g1619 | Cre-Chr1:29272536 | Cre03g1807 | Cre-Chr3:34920700 | 1.10E-17 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
63839 | PF00069 | Pkinase | 5.60E-13 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1619 | K08789 | - | csv:101214945 | 387.497 |