Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1619 ATGTACGACAGTAGCGTTGTCTGGTGCGACATACGGATAAACTTCCCAAAGATGTGGGTGTTTGGTAATTCATTCAAGCCTCAATCAAATTTGATTTGGTCAATTGCGATTAAAGCCTTGCTTGCTGAAAATTGGTTTGAAAGAAACCAAAGGGTCTTTCAAGACAAATCTCTCACTTCTAGCGAATGTTATGAAGTTGCAAGGCTTTTTGCTTACTCTTGGTGTTTTTTCTTGGTGCAAGATATATGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCGCCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCTTGGCCTCAGATACCTGAAGAGATGAGCCATGATGCTCGAGATTTAATTGATCGATTATTGACAGAAGATCCTAACCAGCGACTTGGAGCTATAGGCGCATCAGAGGTGAAGCAGCATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAACCATTCAGATGGTCATGTCTATCCACACAGTGAACTTGAAGATTCGAGTGATGCCGACAGCTTAAGTGGTGATAGTAGTTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA 861 42.28 MYDSSVVWCDIRINFPKMWVFGNSFKPQSNLIWSIAIKALLAENWFERNQRVFQDKSLTSSECYEVARLFAYSWCFFLVQDICATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDARDLIDRLLTEDPNQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDGHVYPHSELEDSSDADSLSGDSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29272536 29289829 + CrPI670011_01g016190.1 Cre01g1619 489164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1619 286 ProSiteProfiles AGC-kinase C-terminal domain profile. 166 269 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1619 286 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 261 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre01g1619 286 Gene3D Transferase(Phosphotransferase) domain 1 84 183 - -
Cre01g1619 286 SMART serkin_6 25 165 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1619 286 ProSiteProfiles Protein kinase domain profile. 1 165 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1619 286 Pfam Protein kinase domain 84 165 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1619 286 Gene3D Phosphorylase Kinase; domain 1 184 194 - -
Cre01g1619 286 MobiDBLite consensus disorder prediction 208 242 - -
Cre01g1619 286 SUPERFAMILY Protein kinase-like (PK-like) 84 203 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1619 Cre-Chr1:29272536 Cre09g2005 Cre-Chr9:39116551 7.50E-67 dispersed
Cre01g1619 Cre-Chr1:29272536 Cre03g1807 Cre-Chr3:34920700 1.10E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63839 PF00069 Pkinase 5.60E-13 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1619 K08789 - csv:101214945 387.497