Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0349 ATGTTTTCCGTGAAAGCGCGGCTATTTCTGGCTTTCTTCTTTGTTATTGGAATTCATAACATCTTCTCCTACACAGATCCGAACGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTCTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCTATACCACGTAGTCTTGGAAAGCTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTTCACTTGAGCAGGAACAGGCTGTCAGGCTCTATACCCCCTAAGCTTTTTAGCGCTGATATGAAATTAATACACATAGTATTTGATCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAGCAATCTTTAGCTTACCACAGATACAACAAATGCTTGAAGGAAGTCCTGCGTGCAACAATAATGTTGATCCCCTCGTGAAACAAAATCATTATTGCCTACCTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGCGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAACTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGCCCTCCATCAGAGACTTGTCTAATGACACCTTGTTTCAGTTACTGAAATACAGCCTCTCCAACAAACTAAATCTTTCTATTGCTTCAGTTGTTATTCAAAAGCCTGTGTTTGAAAGTGATGATTACCTTCACATTCAACTTCAACTTTTTCCACCCTTTGGAAAATATTTCAATCGTTCAGAAATTTTGAGGATTGCGTCTGCGTTGAGTTATCAAACTTTCCTTCTTTCCCCTGATTTAGGATCATTTTATTTCATTCCACTTGATCAGTACAATTTTTTAGCTCCAGATGTTGGAAATTTTAGTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAATCCTATTTGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAATAAGTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTATGATGAGCTTAGGAAGTTGACAAATAATTTCTCCATAAGTAATGAGATTGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATTACTAGGTATGGACAAGTTTTCGCAATCAAAAGAGCTAGGCAAGGCTTGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTCGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTTATGGATCGCTTCGTGACATCCTTGGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAATGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGGGGTATTTAGATCCTGAATATTACACAACGCAACGATTAACTGAGAAGAGTGATGTGTACATCTTTGGAGTTGTTATGCTTGAATTGATTACTTCTAATCGGCCAATTGAGAAAGGGATATATTTAGTTCGTGAAGTGGTTCGACTAATGAACAAGAGCGACAAAGCATATTACGGATTGATGAATATAATAGATGCAACTGTTATAAATGAGATGACAAATCCAATTGAGTTTGGAAGGTTTTTAGAGTTGGCCATAAAATGTGTTGAAGAATCAACTATAAATCGCCCCACGATGAGCCAAATGAAGACTTACAAAGATAGGGTCACAAGGAAGGCAAAGGCCAAAGCTTGCATATATGCAGCAGTGGCTCCTGTTGTATTTAAGAGAATCATGGCCTTGAAGTTAACAAAGGAGATCTGTGAATTCCTCAAAGCAAGGCGAAGGTGGAAAAGAGAAGAAGTGGACAGGGAAAAAGGGAAGTGGCGCAGTAGCTCAGAATCTGCAGTAAAGGATACTGGAATGGCGGGTTTCAGTAAAGGCAGTGCATGCAAGCACTGTGAGAAGCAGAATCATCCACACTTTAGATGCTGGAGAACGCCAGATGTGAAGTGTAAAAGGTGTCATTTAATGGGGCACATTGAAGGGTTCCGTAGGAGAACTTAA 2871 40.51 MFSVKARLFLAFFFVIGIHNIFSYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSLALNSNQLIGSIPRSLGKLSKLVLLDLMENQLNGSLPVSTFDSPGLDLLLQAKHFHLSRNRLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPEAIFSLPQIQQMLEGSPACNNNVDPLVKQNHYCLPNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQNCECQYPFVGSFYFRGPSIRDLSNDTLFQLLKYSLSNKLNLSIASVVIQKPVFESDDYLHIQLQLFPPFGKYFNRSEILRIASALSYQTFLLSPDLGSFYFIPLDQYNFLAPDVGNFSSISNRWLIGIAIGCGLLLLILFGVGVYAIKQKKRVSKAISLSKPFASWSSIEQISGEAPQLKGAIYFSYDELRKLTNNFSISNEIGAGGYGKVYRGITRYGQVFAIKRARQGLKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDILGSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFNAKVADFGLSKLVFDHEKGHISTGVKGTWGYLDPEYYTTQRLTEKSDVYIFGVVMLELITSNRPIEKGIYLVREVVRLMNKSDKAYYGLMNIIDATVINEMTNPIEFGRFLELAIKCVEESTINRPTMSQMKTYKDRVTRKAKAKACIYAAVAPVVFKRIMALKLTKEICEFLKARRRWKREEVDREKGKWRSSSESAVKDTGMAGFSKGSACKHCEKQNHPHFRCWRTPDVKCKRCHLMGHIEGFRRRT 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 589792 605853 - CrPI670011_02g003490.1 Cre02g0349 489630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0349 956 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Cre02g0349 956 FunFam Leucine-rich repeat receptor-like protein kinase 648 852 - -
Cre02g0349 956 Gene3D Transferase(Phosphotransferase) domain 1 648 858 - -
Cre02g0349 956 FunFam Leucine-rich repeat family protein 28 184 - -
Cre02g0349 956 FunFam Leucine-rich repeat protein kinase family protein 185 285 - -
Cre02g0349 956 SUPERFAMILY Protein kinase-like (PK-like) 552 839 IPR011009 -
Cre02g0349 956 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 540 647 - -
Cre02g0349 956 PANTHER RECEPTOR-LIKE PROTEIN 55 40 837 - -
Cre02g0349 956 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Cre02g0349 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 690 702 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0349 956 SMART serkin_6 572 845 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0349 956 Pfam Protein tyrosine and serine/threonine kinase 574 837 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0349 956 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cre02g0349 956 SUPERFAMILY L domain-like 32 319 - -
Cre02g0349 956 ProSiteProfiles Protein kinase domain profile. 572 844 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0349 956 Pfam Leucine rich repeat 243 299 IPR001611 GO:0005515(InterPro)
Cre02g0349 956 CDD STKc_IRAK 578 836 - -
Cre02g0349 956 ProSitePatterns Protein kinases ATP-binding region signature. 578 600 IPR017441 GO:0005524(InterPro)
Cre02g0349 956 Gene3D Ribonuclease Inhibitor 188 330 IPR032675 -
Cre02g0349 956 Gene3D Phosphorylase Kinase; domain 1 539 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0349 Cre-Chr2:589792 Cre10g1471 Cre-Chr10:28570798 2.10E-230 dispersed
Cre02g0349 Cre-Chr2:589792 Cre10g2392 Cre-Chr10:37962893 2.80E-259 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63840 PF07714 PK_Tyr_Ser-Thr 7.50E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0349 - - - 0.0