Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0356 ATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCAGAAGCCATGCCTCTTTCTAGAGGTACTCCTATGTTTTCAATGCTTTATAGATGGAACCCCTTAAGACTGATCATTCAGGGGCTGCTACTGTTCTCATTGTTGAGGTCGAATCATGCATCAACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGACTTGTTAGGGGCACTGAATGATTCCAATCATCAGATTACTGATTGGAATTATCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGATTTTCAGGATCACTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCTAGCCTGGATTTGCAGAACAATAATATAGCTGGTGTTATACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGGTCGACTTGTCGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGGTTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCAAAGAATACAAAGTTTGGGGTAGTGGCGAGTACTGCAAGTTGTGGGGGTTTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACGTGCATAAGCTTAAGGATCCTATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACATGCTACCGATAACTTTAACGAAGCGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCGGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTCCGGTTGATTGGGTTTTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAGAATCTTAGCGTGGCACATCGCTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGAATTGCTTTCGGTGCAGCTCATGGTTTGGAGTATTTACATGAGCACTGTAATCCTAAGATCATTCATCGCGATCTGAAGGCTGCGAATATCTTATTAGACGATGACTTTGAAGCTGTTCTTGGAGATTTCGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATACCTGTCCACTGGAAAGTCGTCCGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAAAACTTAAGAAGCTACGATGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCACTGCTTTGCACTCAAAGCTCACCCGAGGACCGACCCACAATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGGTTGTTGGGAGCATGGAAATGGAAACCTAGGACTGAGTAGCTCTGTCACTGTTGTCTGTCTCTCAAGAAATAGAGCAGATGGACATTTGATTGTGAATTGTGATGGCAAGAGCTTTAGGATACAATATATAGATATTGGTTCGTTCTTCTTCTCCTCCCTTGATCCTGTGGCTACTGCCGAATTCAATTTAATGTCATGGGGAGAAGTGTTTCAAGGTCTCCGTCGTACACTCACCGCTCCACTTCCCATCGACATAGTCGGAGAAGCAGAAGGGACCGAACTCCTTCTCCCTATTACTCCAATTCCCATTCCAGGAGAAGGAGCCGTTCCACCTCCCTTCGCCGCCGTCGAAGTCCTTCCCCTTCCTACCGTCGTCGTAGAAGTCGCTCTCCCACTCCACGGAGACGCCGCCGACGCAGAAGTAGACAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAAGAAGAGTCGAAGAAATTAGAAGAAGATGCAGCTAGGAGGTTGGAAGAATTAATTCAGAAGAATGTTCAAGAAATACTAAACTCTGAAGAGACTAGATTAGAAATACAAAGGCGAATAGAGGAAGGTCGCAAGAAATTGTTTGATGATGTTGATCTGCAACTTGCGAAAGAGAAAGAAGCCGCTCTTACTGCTGCAAGACAGAAAGAAGAACAAGCCCGAAAAGAGAGAGAAGAGCTAGATAGAATGCTGGAAGAGAATAGGAGAAGGGTAGAAGAAGCTCAACGAAGAGAAGCTCTGGAGCTGCAGCGGAAGGAAGAAGAACGATATCGTGAGCTGGAGCTGATTCAGAGACAAAAAGAGGAGGCCGCACGGAGGAAAAAGCTGGAACAGGGAGAAGAGAGAACGTAG 2634 44.8 MIHSSLLAAFAASEAMPLSRGTPMFSMLYRWNPLRLIIQGLLLFSLLRSNHASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQNNNIAGVIPDYLANMTHLQNLNLANNNFNGPIPAAWGRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASAKNTKFGVVASTASCGGFILLSIGAFFAYRCFYVHKLKDPMFVDVAGEDECKLCFGQIRRFSLREIQHATDNFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLRSYDEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEGCWEHGNGNLGLSSSVTVVCLSRNRADGHLIVNCDGKSFRIQYIDIGSFFFSSLDPVATAEFNLMSWGEVFQGLRRTLTAPLPIDIVGEAEGTELLLPITPIPIPGEGAVPPPFAAVEVLPLPTVVVEVALPLHGDAADAEVDKLKKEEEEKKRREEESKKLEEDAARRLEELIQKNVQEILNSEETRLEIQRRIEEGRKKLFDDVDLQLAKEKEAALTAARQKEEQARKEREELDRMLEENRRRVEEAQRREALELQRKEEERYRELELIQRQKEEAARRKKLEQGEERT 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 686546 696806 - CrPI670011_02g003560.1 Cre02g0356 489637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0356 877 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 46 597 - -
Cre02g0356 877 MobiDBLite consensus disorder prediction 805 838 - -
Cre02g0356 877 FunFam Somatic embryogenesis receptor-like kinase 1 373 588 - -
Cre02g0356 877 Pfam Arginine and glutamate-rich 1 741 876 IPR033371 -
Cre02g0356 877 Gene3D Transferase(Phosphotransferase) domain 1 373 587 - -
Cre02g0356 877 Coils Coil 721 773 - -
Cre02g0356 877 Coils Coil 794 874 - -
Cre02g0356 877 ProSiteProfiles Protein kinase domain profile. 296 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0356 877 Pfam Protein tyrosine and serine/threonine kinase 300 568 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0356 877 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Cre02g0356 877 SUPERFAMILY L domain-like 60 195 - -
Cre02g0356 877 SUPERFAMILY Protein kinase-like (PK-like) 277 569 IPR011009 -
Cre02g0356 877 MobiDBLite consensus disorder prediction 728 750 - -
Cre02g0356 877 Pfam Leucine rich repeat 125 183 IPR001611 GO:0005515(InterPro)
Cre02g0356 877 FunFam Somatic embryogenesis receptor kinase 1 265 372 - -
Cre02g0356 877 Gene3D Phosphorylase Kinase; domain 1 265 372 - -
Cre02g0356 877 CDD UDM1_RNF168_RNF169-like 815 872 - -
Cre02g0356 877 SMART serkin_6 296 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0356 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0356 877 Gene3D Ribonuclease Inhibitor 56 215 IPR032675 -
Cre02g0356 877 FunFam Leucine-rich repeat receptor-like kinase 58 166 - -
Cre02g0356 877 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0356 Cre-Chr2:686546 Cre07g2069 Cre-Chr7:36257414 2.60E-158 dispersed
Cre02g0356 Cre-Chr2:686546 Cre07g2068 Cre-Chr7:36241445 1.00E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63841 PF00069 Pkinase 8.90E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0356 - - - 0.0