Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0393 ATGGATGCAGAACCTTCGATAACCAATGGCACAGATGATACAATCGTCTGCTATGCGCCCACCATGATTACTACAAATGGGGTGTGGCAAGGAGACAACCCTCTGGATTATTCTCTTCCTCTCTTCATTTTGCAGTTAACAATGGTGGTTTTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGGGTGATTTTGGGGCCTTCGGTACTAGGGAGAAGTGCTAAATTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATCTATCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCAGATCAGAAATTGAACTACAACACTTACGTTATGTTTCTTGGTATTGCGCTCTCTGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCCATGGCAGCTGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGACTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGTAGGCTTTGTTTTGTTCTGCATCTTCATCGTTAGACCGACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTGTTTGGGGCTTTTGTGTTTGGCTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATAACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGGGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCGTTATGACCGGGATAATAACACCTGTAGTTACAATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAGCCAGATTCAGAGTTCAGAGTTTTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCCATCTCCTTGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGTCGAGCCTCAGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGTCCTGCTTTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCCCCTTACTCGACAATGCACGAAGACATATGCAATTTAGCCGAGGATAAACGGGTTGCCCTCATAATCATCCCATTCCATAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTTAACCAAAATGTGTTAGCCAATGCCCCTTGCTCCGTCGGAATTCTAGTCGATCGAGGCTTAAACGGCTCGAATCGAGTTGCTTCAAACAAGGCAACTCATTATAACATAATCACGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCTTATCATACGCATGGAGAATGTCAGAACATCCCGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAATAATTGAACCAAAACCAGAAGAGGACGCACCAATCGTTTCAGCAATGGAAACAGAAATTAGCAGAGAGAGGAAACTCGATGAAGATTACATAAACGAATTTAGGACAAAGAACCCAAATAGCGAGTCAATTACTTACACAGAGAGAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTAGGAAGAGGTGAATCTCATGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCGACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGAACATGGAGAAGAAGAAGGTTCACCACGCAACGAAGAACCCATTGATCCCTACCAAAGCCTGAGATCAATGAATTTGAGGCAACATACTCCACCAAGAACTCAAATTATTTATGATACATGA 2511 43.61 MDAEPSITNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVLMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYVMFLGIALSVTAFPVLARILAELKLINSELGRMAMAAALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSVGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIIHLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVALIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKATHYNIITLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQEIIEPKPEEDAPIVSAMETEISRERKLDEDYINEFRTKNPNSESITYTERVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEHGEEEGSPRNEEPIDPYQSLRSMNLRQHTPPRTQIIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1105028 1107791 + CrPI670011_02g003930.1 Cre02g0393 489674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0393 836 MobiDBLite consensus disorder prediction 796 836 - -
Cre02g0393 836 FunFam Cation/H(+) antiporter 15 41 441 - -
Cre02g0393 836 PANTHER CATION/H + ANTIPORTER 17 790 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cre02g0393 836 MobiDBLite consensus disorder prediction 817 836 - -
Cre02g0393 836 Pfam Sodium/hydrogen exchanger family 54 431 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cre02g0393 836 Gene3D - 477 758 - -
Cre02g0393 836 Gene3D - 41 439 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0393 K26731 - - csv:101219265 1517.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0393 Cre-Chr2:1105028 Cre07g1122 Cre-Chr7:22410072 2.80E-207 dispersed
Cre02g0391 Cre-Chr2:1081305 Cre02g0393 Cre-Chr2:1105028 7.60E-78 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0393 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.9
Cre07g1116 . 50 824 Antiporter Super Family AT2G13620 50.4 1.5e-208 723.4
Cre02g0391 . 1 175 Antiporter Super Family AT2G13620 54.7 2.4e-49 194.5
Cre04g0930 . 76 846 Antiporter Super Family AT3G53720 68.9 3.6e-289 991.1
Cre07g1116 . 122 821 Antiporter Super Family AT3G53720 50.4 6.5e-182 634.8
Cre07g1122 . 1 779 Antiporter Super Family AT5G41610 69.9 1.5e-309 1058.9
Cre07g1119 . 7 774 Antiporter Super Family AT5G41610 68.0 1.2e-298 1022.7
Cre07g1116 . 40 824 Antiporter Super Family AT5G41610 66.8 4.1e-296 1014.2
Cre07g1114 . 1 780 Antiporter Super Family AT5G41610 64.7 5.1e-286 980.7
Cre04g0930 . 8 820 Antiporter Super Family AT5G41610 50.9 8.6e-209 724.2
Cre07g1119 . 11 791 Antiporter Super Family AT4G23700 65.2 5.9e-290 993.8
Cre07g1116 . 49 841 Antiporter Super Family AT4G23700 64.2 2.6e-285 978.4
Cre07g1122 . 9 779 Antiporter Super Family AT4G23700 64.0 5.0e-281 964.1
Cre07g1114 . 11 778 Antiporter Super Family AT4G23700 63.0 1.8e-278 955.7
Cre07g1122 . 5 779 Antiporter Super Family AT3G17630 64.0 1.4e-272 936.0
Cre07g1116 . 47 822 Antiporter Super Family AT3G17630 62.4 4.3e-269 924.5
Cre07g1119 . 7 791 Antiporter Super Family AT3G17630 61.4 2.8e-268 921.8
Cre07g1114 . 7 778 Antiporter Super Family AT3G17630 61.1 2.8e-260 895.2
Cre04g0930 . 8 822 Antiporter Super Family AT3G17630 51.5 2.3e-206 716.1
Cre07g1119 . 1 775 Antiporter Super Family AT1G64170 57.8 1.1e-240 830.1
Cre07g1116 . 50 824 Antiporter Super Family AT1G64170 57.4 3.6e-239 825.1
Cre07g1122 . 15 782 Antiporter Super Family AT1G64170 56.9 9.4e-232 800.4
Cre07g1114 . 12 780 Antiporter Super Family AT1G64170 56.4 2.0e-229 792.7
Cre02g0393 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.9
Cre07g1116 . 50 824 Antiporter Super Family AT2G13620 50.4 1.5e-208 723.4
Cre02g0391 . 1 175 Antiporter Super Family AT2G13620 54.7 2.4e-49 194.5
Cre07g1119 . 1 775 Antiporter Super Family AT1G64170 57.8 1.1e-240 830.1
Cre07g1116 . 50 824 Antiporter Super Family AT1G64170 57.4 3.6e-239 825.1
Cre07g1122 . 15 782 Antiporter Super Family AT1G64170 56.9 9.4e-232 800.4
Cre07g1114 . 12 780 Antiporter Super Family AT1G64170 56.4 2.0e-229 792.7
Cre07g1119 . 11 791 Antiporter Super Family AT4G23700 65.2 5.9e-290 993.8
Cre07g1116 . 49 841 Antiporter Super Family AT4G23700 64.2 2.6e-285 978.4
Cre07g1122 . 9 779 Antiporter Super Family AT4G23700 64.0 5.0e-281 964.1
Cre07g1114 . 11 778 Antiporter Super Family AT4G23700 63.0 1.8e-278 955.7
Cre07g1122 . 1 779 Antiporter Super Family AT5G41610 69.9 1.5e-309 1058.9
Cre07g1119 . 7 774 Antiporter Super Family AT5G41610 68.0 1.2e-298 1022.7
Cre07g1116 . 40 824 Antiporter Super Family AT5G41610 66.8 4.1e-296 1014.2
Cre07g1114 . 1 780 Antiporter Super Family AT5G41610 64.7 5.1e-286 980.7
Cre04g0930 . 8 820 Antiporter Super Family AT5G41610 50.9 8.6e-209 724.2
Cre07g1122 . 5 779 Antiporter Super Family AT3G17630 64.0 1.4e-272 936.0
Cre07g1116 . 47 822 Antiporter Super Family AT3G17630 62.4 4.3e-269 924.5
Cre07g1119 . 7 791 Antiporter Super Family AT3G17630 61.4 2.8e-268 921.8
Cre07g1114 . 7 778 Antiporter Super Family AT3G17630 61.1 2.8e-260 895.2
Cre04g0930 . 8 822 Antiporter Super Family AT3G17630 51.5 2.3e-206 716.1
Cre04g0930 . 76 846 Antiporter Super Family AT3G53720 68.9 3.6e-289 991.1
Cre07g1116 . 122 821 Antiporter Super Family AT3G53720 50.4 6.5e-182 634.8
Cre09g0382 . 47 790 Antiporter Super Family AT3G52080 54.1 4.9e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39