Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0400 ATGCCTTCCCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCTTACGCCGCCCACCAAACTCTCCGCCCTGAGATCGCTGCCGCCTGCACAGCCACTCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAACCGTCTTCCCCAGAATCCCACGCCGCTGCAGATTATTCAGGCCGCCGTCTGGCTCTCCTCGGAGAATCTCAAAACTGCCAAATCCATGGTGAAGGCCATTCTCGATTCCTCCAAGGAGAGCCCCAACCGCAACCGCACCGCCGCGGCGCTGAGCTGCCTGGAGGCGCTGGGTTACTCCGAATACCGAATTTCGCTTTCCAACGACGCCATTCCGCTCGGTCGGACTAAAGACGCGCGCGCGTGGCTAAGCGCGTCACTCCTCTACCAGACTGGTTGCCGGTCCGGTCTCATGTACGTGAACGACACGCGCGAAGTAGATCAAACGATGTCGTTTCTTGACAATCTGACCGTACTGTCGAGCAACGCGGTGAGCATGGCGGTGGCGTACGATATTTTCGGGAATGAGACGGTGGCGTGGGGCCCACCGAGGACGGAGCGAGACGGGTTCTGGGAAGGGAGTAGTGGGACGGCGGTGGGGACGGGTATGAGGATTCCGGCAAAGACGGAGGCGAACGCGACGGTGTGTAAAGACGGGAGTGAGGAATGTTACACGACGGTGCAGGCGGCGGTGGAGGCGGCGCCGGGAAACTCGGCGGTGAGATTTGTGATACACATAAAGGAAGGGGTTTACGAGGAGAGTGTGAGAGTGGGATTGGAGAAGAAGAATTTGGTGTTTTTGGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCTTTGAATGTGGGCCAGCCTGGGATCTCAACCTACAATTCGGCTACTGTCGGAGTTCTTGGGGATGGATTCATGGCGAGTGGACTCACCATTCAAAACACAGCAGGCCCTGATGCCCACCAAGCTGTGGCCTTTAGATCAGATAGTGATCTCTCAATCATACATAATTGTGAGTTTATAGGCAATCAAGACACTCTCTACGCCCATTCTCTCCGCCAATTCTACAACTCCTGTCGAATCCTAGGCAATGTTGACTTCATCTTTGGCAACTCAGCCTCCATCTTCCTAAACTGTCATATCTTAGTCCGTCCTCGCCAGCTCAACCCTCGGCTCGGAGACGACAACCCCATAACTGCACACGGGAGGACTGACCCTGCGCAGTCGACTGGGTTCGTGTTCCAAAACTGCCTCGTCAACGGCACTGAGGAGTTCATGTCGTTGTACTATGCCAATCCTAAGGCGCATAGGACCTTCTTGGGGCGACCGTGGAAGGAATATTCGAGGACGGTTTTTATACATTGTGATCTTGAAGCTCTTGTTTCGTCGTCTGGGTGGATGCCGTGGAGTGGGGATTTTGGTTTGAAGACATTATATTATGGGGAGTTTGAGAATTTTGGAATTGGATCGAATTCCTCGGAGCGAGTTCGATGGAGTAACCAGATCCCTGCTGAGTATGTTTTTAGTTACTCTGTTCAGAATTTCATCCAAGGAAATGAATGGATTCCTTCATCTTAG 1587 53.56 MPSLLFLFFLPLHFSYAAHQTLRPEIAAACTATRFPDQCASSISQSNRLPQNPTPLQIIQAAVWLSSENLKTAKSMVKAILDSSKESPNRNRTAAALSCLEALGYSEYRISLSNDAIPLGRTKDARAWLSASLLYQTGCRSGLMYVNDTREVDQTMSFLDNLTVLSSNAVSMAVAYDIFGNETVAWGPPRTERDGFWEGSSGTAVGTGMRIPAKTEANATVCKDGSEECYTTVQAAVEAAPGNSAVRFVIHIKEGVYEESVRVGLEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIHNCEFIGNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASIFLNCHILVRPRQLNPRLGDDNPITAHGRTDPAQSTGFVFQNCLVNGTEEFMSLYYANPKAHRTFLGRPWKEYSRTVFIHCDLEALVSSSGWMPWSGDFGLKTLYYGEFENFGIGSNSSERVRWSNQIPAEYVFSYSVQNFIQGNEWIPSS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1160634 1163843 + CrPI670011_02g004000.1 Cre02g0400 489681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0400 528 FunFam Probable pectinesterase/pectinesterase inhibitor 51 24 175 - -
Cre02g0400 528 NCBIfam pectinesterase inhibitor domain 4 171 IPR006501 GO:0004857(InterPro)
Cre02g0400 528 SUPERFAMILY Pectin lyase-like 216 527 IPR011050 -
Cre02g0400 528 Pfam Pectinesterase 218 522 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre02g0400 528 SMART PMEI_2 21 172 IPR006501 GO:0004857(InterPro)
Cre02g0400 528 Gene3D - 212 528 IPR012334 -
Cre02g0400 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 172 IPR035513 -
Cre02g0400 528 PANTHER PECTINESTERASE 18 527 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre02g0400 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Cre02g0400 528 FunFam Pectinesterase 4 215 528 - -
Cre02g0400 528 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857(InterPro)
Cre02g0400 528 CDD PMEI-like_3 28 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0400 Cre-Chr2:1160634 Cre05g0907 Cre-Chr5:8309567 4.30E-76 dispersed
Cre02g0400 Cre-Chr2:1160634 Cre02g0401 Cre-Chr2:1166126 1.70E-210 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0400 - - - 0.0