Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0401 ATGCTCCCCAGAAAACCCCCATTCCCTTTCCCCATTTCCAAATCCACTCTCCTTTTCCTTTCCATGGCTTCCCTCTCTTTCCTCTCTTTCCTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCCTCCTCCTCCTCCTCTGCCGCTCGCCATCGCCACCACCACCTCCCAACCCATTTCACCAACCCCCCTTCCACCGACGACGTCATCCTTCACGCCTGCAAGGCCACCCGTTTTCCCGATCAATGCGGATCTTCCCTCTCTCACTCCTCCTCTCTCCCTCCCAATCCTACCCCTCTCCAGATCCTCCAATCCGCCGTCGCCCTCTCATCCGACGGTTTAGCCACTGCTCAATCCATGGTTAACCAGATTCTCGATTCCTCCGCCAAGAATCTCAATCGGACCACCGCTGCCAAGAACTGCCTTGAGGTACTGCGGAATTCCGATTACCGTATTTCTCTCACCAACGACGCTCTCCGCCGTGGTCGGACCAAGGACGCCCGCGCCTGGCTGAGTGCGTCCCTACTTTACCATTACGATTGCTGGTCTGCGCTCAAGTATGCTAACGACACTCAATTGGTTGACAAAACCATGGCGTTTCTCGATTCTCTTATTGGTCTCTCCAGCAACGCGCTGAGTATGTTGGTGGCTTACGACATTTCCGGAAACGATACGGCGGCGTGGACGCCGCCGAGGACGGAGCGGGATGGGTTTTGGGAAGGCGGTGGTGGCGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGTCGAAGGTGGCGGCTGATGCGACGGTGTGCAAGGATGGCGCTGGGGGATGTTATAAAACTGTTCAGGAAGCTGTTAACGCGGCGCCGGAGAATGCGGCGGCGCGTAGGTTTGTGATTCATATTAAGGAAGGTGTTTATGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCACTTAATATGGGCCAGCCTGGGATTTCCACTTACAACACCGCCACCGTTGGAGTACTTGGTGATGGATTCATGGCTAGCGGTCTCACCATTCAAAACACAGCAGGGCCAGATGCTCATCAAGCTGTGGCTTTTAGATCAGACAGTGATCTCTCAGTCATTCAAGACTGTGAGTTTCTAGGCAATCAAGACACTCTCTATGCTCACTCCCTTCGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGACTGCGAGATCCTAGTTCGCCCCAGACAGCTCAAGCCTGAGAAAGGTGAAAACAACGCCATCACTGCTCAGGGCAGGACCGACCCTGCTCAAGCGACAGGGTTCGTATTCCAAAACTGCCTCATAAATGGCACTCAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGTGCATAAAAACTACTTGGGGAGACCGTGGAAGGAGTACTCGAGGACAGTTTTTATACATTGTACTCTCGAGGCTCTTGTCACGCCTGCGGGGTGGATGCCATGGAGTGGGGATTTTGCATTGAAGACTCTTTTCTATGGAGAGTTTGAGAATTCGGGAGCAGGGTCGAAGACATCGGAGAGAGTCGGGTGGAGTAGTCAGATTCCAGCACAACATGTTTTTAGTTACTCTGTTCAAAATTTCATTCAGGGAGATGAATGGATTCCTTCGTCTCAGTCATCTAATGAACCAAAAATGTTGAACAAGAAAAGTAAAGATGTGAAATTAGATTAG 1773 51.04 MLPRKPPFPFPISKSTLLFLSMASLSFLSFLSLFFFFLSLSSSSSSAARHRHHHLPTHFTNPPSTDDVILHACKATRFPDQCGSSLSHSSSLPPNPTPLQILQSAVALSSDGLATAQSMVNQILDSSAKNLNRTTAAKNCLEVLRNSDYRISLTNDALRRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDISGNDTAAWTPPRTERDGFWEGGGGGSGLGFSGGFPSKVAADATVCKDGAGGCYKTVQEAVNAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNMGQPGISTYNTATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAQGRTDPAQATGFVFQNCLINGTQEYMSLYYSKPKVHKNYLGRPWKEYSRTVFIHCTLEALVTPAGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVQNFIQGDEWIPSSQSSNEPKMLNKKSKDVKLD 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1166126 1168752 + CrPI670011_02g004010.1 Cre02g0401 489682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0401 590 FunFam Pectinesterase 254 579 - -
Cre02g0401 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 216 IPR035513 -
Cre02g0401 590 CDD PMEI-like_3 72 213 - -
Cre02g0401 590 Pfam Plant invertase/pectin methylesterase inhibitor 69 213 IPR006501 GO:0004857(InterPro)
Cre02g0401 590 NCBIfam pectinesterase inhibitor domain 31 213 IPR006501 GO:0004857(InterPro)
Cre02g0401 590 MobiDBLite consensus disorder prediction 568 590 - -
Cre02g0401 590 PANTHER PECTINESTERASE 32 570 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre02g0401 590 FunFam Probable pectinesterase/pectinesterase inhibitor 51 67 216 - -
Cre02g0401 590 SUPERFAMILY Pectin lyase-like 257 570 IPR011050 -
Cre02g0401 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 213 IPR035513 -
Cre02g0401 590 SMART PMEI_2 64 213 IPR006501 GO:0004857(InterPro)
Cre02g0401 590 Gene3D - 254 577 IPR012334 -
Cre02g0401 590 Pfam Pectinesterase 260 565 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0401 Cre-Chr2:1166126 Cre05g0907 Cre-Chr5:8309567 5.30E-83 dispersed
Cre02g0400 Cre-Chr2:1160634 Cre02g0401 Cre-Chr2:1166126 1.70E-210 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0401 - - - 0.0