Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0437 ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGCTTTGTTTGAAGATCATCAAGATCATGAAGTGGCAGCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACTTAACTTTTTTCCAACTTCCTTCAATTCCTCAAACCCATCCTCCTTCCCCTCCATTTGATCCTCCAGATTTCTCCATTTCTAGTAATAATACTACTACTAATAATAATAATAATAGTAATTCCAATCTCAATGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCCTCCCTTTCCTATGAATTTGCACCTCAACACCTCCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAGATTGGAGAAAAGTTGATGAATGGGAAGAGATCAAATAATGAGAATCATCAATTGGGAGTGTCAACAATGAAGATGAAGAAAATGAAGGGAAGAAGAAAAGTGAGAGAACCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGCGAAAATACGGACAGAAAGTGGTCAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAAAGAGTAGAAAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCCCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA 744 38.04 MGSKSQVLLNPQALFEDHQDHEVAANSQMGFFNFPSNLTFFQLPSIPQTHPPSPPFDPPDFSISSNNTTTNNNNNSNSNLNETLLSSSLLPLKPSLSYEFAPQHLLSLQTSTPNLWPWGEIGEKLMNGKRSNNENHQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1591036 1593069 - CrPI670011_02g004370.1 Cre02g0437 489718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0437 247 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 233 IPR044810 GO:0003700(InterPro)
Cre02g0437 247 MobiDBLite consensus disorder prediction 43 80 - -
Cre02g0437 247 FunFam WRKY transcription factor 57 156 230 - -
Cre02g0437 247 ProSiteProfiles WRKY domain profile. 165 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0437 247 SMART WRKY_cls 170 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0437 247 MobiDBLite consensus disorder prediction 60 80 - -
Cre02g0437 247 SUPERFAMILY WRKY DNA-binding domain 162 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0437 247 Gene3D WRKY domain 157 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0437 247 Pfam WRKY DNA -binding domain 171 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0437 Cre-Chr2:1591036 Cre04g1218 Cre-Chr4:30885401 2.20E-46 dispersed
Cre02g0437 Cre-Chr2:1591036 Cre02g0440 Cre-Chr2:1646248 1.30E-19 proximal
Cre05g0068 Cre-Chr5:893718 Cre02g0437 Cre-Chr2:1591036 2.50E-32 transposed
Cre02g0437 Cre-Chr2:1591036 Cre04g1225 Cre-Chr4:30981811 2.30E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53071 PF03106 WRKY 4.20E-24 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0437 - - - 0.0