Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0439 ATGTCATTGCCTTTGTCAATCAATACACACACAGACCGAATAAATGGAAAAGTAGAAACACACAAAGCAAAAGGATCCCAACGAAGATTCAAGAACACCCACCTGAAAATTTTTGTTTCTGCTACAAAAAGAAGGCTCCTCAAAGTCATCTTCCTCGGTGACAGTGGAGTCGGGAAGACCTCTTTGATGAATCGATATGTGTATAAGAAATTTAATCTACAGTATAAAGCAACGATTGGTGCTGACTTTATGACAAAGGAGCTAAAGATTGATGACCAACTTGTCACATTGCAAGTTTGGGACACCGCAGGGCAGGAAAGGTTTCAGAGTCTAGGGGCTGCATTTTACAGAGGAGCAGATTGCTGTGTTTTTGTCTATGATGTGAATGTGGCCAAATCATTTGAATCACTTAGCAGTTGGCATGAGGAGTTTCTCAAGCAGGCAGCACCAGCTGATCCGAAAGCATTCCCCTTCCTATTACTCGGGAACAAGATCGATGTAGACAACGGACGTAGCCGAGCCGTCTCAGAGAAAAGGGCAAGACAATGGTGTGATTCCAGGGGAAACATGCCATACTTTGAGACCTCAGCAAAAGAGGATTATAATGTCAATGAAGCATTTCTTTGCATTGCAAAAGCTGCATTAACCAATGAAGAAGAGCAGGACAATTACTTTGAAAGTATTTCTGAGTCTGTTTCCGAAGTGGAGACAAGAGGAGGAGGAGGAGGAGGCTGTGCTTGTTAA 744 42.88 MSLPLSINTHTDRINGKVETHKAKGSQRRFKNTHLKIFVSATKRRLLKVIFLGDSGVGKTSLMNRYVYKKFNLQYKATIGADFMTKELKIDDQLVTLQVWDTAGQERFQSLGAAFYRGADCCVFVYDVNVAKSFESLSSWHEEFLKQAAPADPKAFPFLLLGNKIDVDNGRSRAVSEKRARQWCDSRGNMPYFETSAKEDYNVNEAFLCIAKAALTNEEEQDNYFESISESVSEVETRGGGGGGCAC 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1630947 1633312 - CrPI670011_02g004390.1 Cre02g0439 489720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0439 247 Gene3D - 39 230 IPR027417 -
Cre02g0439 247 SMART ran_sub_2 52 238 - -
Cre02g0439 247 SMART rab_sub_5 47 217 - -
Cre02g0439 247 SMART ras_sub_4 44 217 - -
Cre02g0439 247 NCBIfam small GTP-binding protein domain 47 207 IPR005225 GO:0005525(InterPro)
Cre02g0439 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 223 IPR027417 -
Cre02g0439 247 Pfam Ras family 48 214 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0439 247 CDD Rab7 47 220 - -
Cre02g0439 247 PRINTS Transforming protein P21 ras signature 88 110 - -
Cre02g0439 247 PRINTS Transforming protein P21 ras signature 70 86 - -
Cre02g0439 247 PRINTS Transforming protein P21 ras signature 47 68 - -
Cre02g0439 247 PRINTS Transforming protein P21 ras signature 192 214 - -
Cre02g0439 247 PRINTS Transforming protein P21 ras signature 154 167 - -
Cre02g0439 247 SMART rho_sub_3 49 217 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0439 247 ProSiteProfiles small GTPase Rab1 family profile. 40 247 - -
Cre02g0439 247 ProSiteProfiles small GTPase Rho family profile. 40 217 - -
Cre02g0439 247 PANTHER RAB FAMILY 42 225 - GO:0005774(PANTHER)
Cre02g0439 247 ProSiteProfiles small GTPase Ras family profile. 42 247 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0439 247 FunFam Ras-related protein Rab7 39 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0439 K07897 - - csv:101212418 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0439 Cre-Chr2:1630947 Cre09g1021 Cre-Chr9:10465024 3.90E-80 dispersed
Cre02g0439 Cre-Chr2:1630947 Cre11g2175 Cre-Chr11:33468511 3.70E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
Vvi7g1168 . Blo16g00503 . . . . . . . . . Cma20g01106 . Car20g00951 . . Cpe16g00052 . . . . . . . . . . . . . . . . Cone8ag0070 . . . . . . . Bda11g01339 . . . . Bma06g00545 Sed05g3820 . Cmo20g01136 . . . . . . Bhi10g02307 Tan07g0957 . . Hepe10g0784 . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 Lsi10g00673 Csa02g01557 . Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002492 2 2 2 2 2 1 3 1 1 1 1 1 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 5 4 1 57