Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0512 ATGGAGCTCTTTCGTTGTCTTGTCTTTCTAATTGTATGTGTTTTAGGACTTGCTAGCTCAAGCCAAGCTCAGCTAGAGCTTGGCTACTATGGAAAGAGCTGCCCTCGTGCTGAGAAAATCGTCTACGATTACGTTTACAAGAACATTCCCAAGGTTCCTACCTTGGCTTCTGCCTTACTTAGAATGCATTTTCACGACTGCTTCGTTCGGGGTTGTGATGCATCTGTACTTTTGAACTCAACTACGAACAACCAAAGTGAGAAAGTATCTCCACCAAATCTAACACTGAGAGGCTTCGACTTCATTGATAAAATTAAGAAACTTTTGGAAGCTGAATGCCCTGGAGTCGTCTCCTGCGCCGACATTATTTCTTTAGTTGCAAGAGACTCCGTCGTTGCTATCGGCGGTCCATTCTGGAGGGTTCCGACCGGAAGGAGAGATGGATTGATCTCAAGATCCTCAGAAGCTTTGGTGAACATTCCTCCACCGTTTGCCAATTTGTCAACTCTACAACAACAATTCGCTAACAAGGGTCTTGATCTCAAAGACTTGGTTTTGCTTTCAGGAGCGCACACAATTGGGGTATCTCACTGCTCGTCCTTTACGCGGCGGCTCTACAACTTCACCGGCGTGGGAGATCAAGACCCATCACTCGACAGCCAGTACGCCGCAAATCTCAAGGCAAACAAATGCAAAAGCATTAGCGCCAACGGCATTGTGGAAATGGACCCTGGCAGTTTCAAAACCTTCGATCTCAGCTACTACTCCCTTCTTCTGAAGCGCCGAGGGCTGTTCCAGTCCGACGCGGCTCTGACCACCAGCGCAGCCACCAAGGCCTTCGTCACCGACCTGCTCAATGGCTCCGTTCAGAACTTTTTCGCCCAGTTTGGGTTAGCCTTGGAGAAGATGGGTCGCATAGGGGTCAAGACTGGGTCCGAGGGTGAGATTCGCAACCACTGCGCTTTTGTAAATGCCTAG 978 48.98 MELFRCLVFLIVCVLGLASSSQAQLELGYYGKSCPRAEKIVYDYVYKNIPKVPTLASALLRMHFHDCFVRGCDASVLLNSTTNNQSEKVSPPNLTLRGFDFIDKIKKLLEAECPGVVSCADIISLVARDSVVAIGGPFWRVPTGRRDGLISRSSEALVNIPPPFANLSTLQQQFANKGLDLKDLVLLSGAHTIGVSHCSSFTRRLYNFTGVGDQDPSLDSQYAANLKANKCKSISANGIVEMDPGSFKTFDLSYYSLLLKRRGLFQSDAALTTSAATKAFVTDLLNGSVQNFFAQFGLALEKMGRIGVKTGSEGEIRNHCAFVNA 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2214288 2215794 - CrPI670011_02g005120.1 Cre02g0512 489793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0512 325 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 FunFam Peroxidase 161 303 - -
Cre02g0512 325 FunFam Peroxidase 28 172 - -
Cre02g0512 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g0512 325 SUPERFAMILY Heme-dependent peroxidases 24 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 Pfam Peroxidase 45 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cre02g0512 325 Gene3D - 29 324 - -
Cre02g0512 325 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0512 325 Gene3D Peroxidase, domain 2 161 303 - -
Cre02g0512 325 PANTHER PEROXIDASE 25-RELATED 15 320 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0512 Cre-Chr2:2214288 Cre06g1309 Cre-Chr6:7047846 1.00E-80 dispersed
Cre02g0512 Cre-Chr2:2214288 Cre02g0513 Cre-Chr2:2222810 1.60E-102 tandem
Cre01g1086 Cre-Chr1:19475845 Cre02g0512 Cre-Chr2:2214288 1.70E-59 transposed
Cre09g1493 Cre-Chr9:29686902 Cre02g0512 Cre-Chr2:2214288 3.30E-58 transposed
Cre02g0512 Cre-Chr2:2214288 Cre02g1179 Cre-Chr2:11047108 9.00E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0512 K00430 - mdm:103442590 473.011