Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0513 ATGCTTGTATCGTCTCTCTCAAATATTGTCGAAGCGCAAAACTTGACAGTCGGATTTTACCAGGGTAGCTGCCCCGGGGTGGAGTATACTGTTGCCAAAACGGTAGCTCTATATATTAAAAAACAACCATCAATAGCTGCTTCTTTATTGAGGATACACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTGCTAAATTCTACAACAAACAACCAAGCTGAGAAAGATGCATTTCCCAACCTTAGTTTAAGAGGTTTCAATGTCATTGACGCTGTTAAAGTTGCCGTCGAAAAGCAATGTCCCGGCGTCGTTTCTTGTGCTGATATCCTCGCTTTGATAGCTCGTGACGCAGTTAGAATGATTGGAGGGCCGCTGTGGGAAGTTCCAACAGGAAGAAGAGATGGAAGAGTATCGATCTCCAGAGAAGCGTTGATCAATTTGCCGCCTCCCTTCGCTAATATCTCTTCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTTTCCGTCAAAGATCTGGTCGTTTTATCCGGATCACACACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGCCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCTAAACTAGACAAATACTACGCCGTCGCACTCAAGAACAAATGCAAGCCAAATGACCAGAAAACCATCGTCGAGATGGATCCTGGAAGCTTTAAGACCTTCGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCCGCTCTTCTCGACGATCCTGATACCAAAGCTTACGTACTGCTTCAGGCAAGTACACGCGGCGCTACTTTCGCCGCCGATTTCGCTAAATCCATGGTGAATATGGGGAATATCGGCGTCCTCACCGGCACCGACGGCGAAATTAGGCGGCGATGTGCTTTGGTTAACTGA 942 47.13 MLVSSLSNIVEAQNLTVGFYQGSCPGVEYTVAKTVALYIKKQPSIAASLLRIHFHDCFVRGCDGSVLLNSTTNNQAEKDAFPNLSLRGFNVIDAVKVAVEKQCPGVVSCADILALIARDAVRMIGGPLWEVPTGRRDGRVSISREALINLPPPFANISSLKTSFLSKGLSVKDLVVLSGSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYAVALKNKCKPNDQKTIVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVLLQASTRGATFAADFAKSMVNMGNIGVLTGTDGEIRRRCALVN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2222810 2225252 - CrPI670011_02g005130.1 Cre02g0513 489794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0513 313 CDD secretory_peroxidase 14 312 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 106 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 24 43 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 48 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 87 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Plant peroxidase signature 125 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 ProSiteProfiles Plant heme peroxidase family profile. 14 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 FunFam Peroxidase 18 161 - -
Cre02g0513 313 Pfam Peroxidase 32 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 FunFam Peroxidase 151 292 - -
Cre02g0513 313 PANTHER PEROXIDASE 25-RELATED 16 309 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Haem peroxidase superfamily signature 125 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Haem peroxidase superfamily signature 107 124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0513 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
Cre02g0513 313 Gene3D Peroxidase, domain 2 151 292 - -
Cre02g0513 313 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601(InterPro)
Cre02g0513 313 Gene3D - 18 313 - -
Cre02g0513 313 SUPERFAMILY Heme-dependent peroxidases 14 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0513 Cre-Chr2:2222810 Cre02g1179 Cre-Chr2:11047108 1.00E-93 dispersed
Cre02g0512 Cre-Chr2:2214288 Cre02g0513 Cre-Chr2:2222810 1.60E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0513 K00430 - csv:101219177 552.747