Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0516 ATGAGCCGTCGGATCAACTACGAGATTTTATCTGCACCGTCTGTTCGTCTCCGGATTCACATCTTTTTCTCCCGATTTGAGCACAACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGGCAAAAGAATACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTCAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGACCAAGTTATGGATCATTGGACCCTTTTAATTAATGATGATGCATTTCCTGCTTTCTCATCCCGATTGCGACATCTAACACATCATTTTATCGAATATGGTCCTGTATCTGTCCAGAGCTATAGGGTGTCCACAATCTTAATTCAGGACGAGAGGGACTTGGTTAGGGTTTCTCTTTTGTGCTTGCTTGTATTGTTTTTTCTGTTTCTGGGATCGAACCGCAAGATCCGTTTATTTTCTGGGATTTTTGAGGAGCTGAATTTAAGAGCCCATAATTTATTTGCTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGAGCAAAAGAGTATGTTCATGTGCGTATACAGCAACGCAACGGGAGAAAAAGTCTGACAACTGTCCAAGGACTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAGAGAAAGAATGTATCTACCTTCCTTGTGCAGAGCATTGTTCAACCTTTCGCCCTGCTTTCTCGTGATCGAATTGTATTCTTAGCATTTTTATTCATTCATGAGACTGCTGCATTCGGTACTATTCCCCAACTCCTGATTGAGTTGGTTCTCAGTTCTCACTAA 1095 43.29 MSRRINYEILSAPSVRLRIHIFFSRFEHNPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHDQVMDHWTLLINDDAFPAFSSRLRHLTHHFIEYGPVSVQSYRVSTILIQDERDLVRVSLLCLLVLFFLFLGSNRKIRLFSGIFEELNLRAHNLFAGYLCSTPDSQVSYPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQSIVQPFALLSRDRIVFLAFLFIHETAAFGTIPQLLIELVLSSH 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2236454 2243134 + CrPI670011_02g005160.1 Cre02g0516 489797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0516 364 FunFam Eukaryotic translation initiation factor SUI1 227 330 - -
Cre02g0516 364 ProSiteProfiles Translation initiation factor SUI1 family profile. 253 323 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0516 364 Pfam Translation initiation factor SUI1 250 321 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0516 364 Pfam Translation initiation factor SUI1 44 118 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0516 364 Gene3D - 18 128 - -
Cre02g0516 364 Gene3D - 225 328 - -
Cre02g0516 364 ProSiteProfiles Translation initiation factor SUI1 family profile. 47 117 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0516 364 SUPERFAMILY eIF1-like 30 128 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0516 364 CDD eIF1_SUI1 251 321 IPR005874 GO:0003743(InterPro)
Cre02g0516 364 CDD eIF1_SUI1 45 127 IPR005874 GO:0003743(InterPro)
Cre02g0516 364 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 29 127 - GO:0003723(PANTHER)
Cre02g0516 364 FunFam Eukaryotic translation initiation factor SUI1 17 129 - -
Cre02g0516 364 NCBIfam translation initiation factor SUI1 233 322 IPR005874 GO:0003743(InterPro)
Cre02g0516 364 NCBIfam translation initiation factor SUI1 28 127 IPR005874 GO:0003743(InterPro)
Cre02g0516 364 SUPERFAMILY eIF1-like 245 322 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0516 Cre-Chr2:2236454 Cre09g1031 Cre-Chr9:10561793 3.20E-38 dispersed
Cre10g0749 Cre-Chr10:7294473 Cre02g0516 Cre-Chr2:2236454 5.50E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0516 K03113 - csv:101219651 198.749